In this notbook we are going to filter link by DARs and DEA in order to analyse those peak that are deferentially expressed and deferentially accessible
library(RColorBrewer)
library(Signac)
library(Seurat)
library(GenomicRanges)
library(future)
library(harmony)
library(EnsDb.Hsapiens.v86)
library(stringr)
library(dplyr)
library(ggplot2)
library(patchwork)
library(kableExtra)
library(tidyverse)
library(BSgenome.Hsapiens.UCSC.hg38)
library(plyr)
library(biomaRt)
library(BiocManager)
library(GenomicRanges)
set.seed(123)
# Paths
path_to_obj_links_DARs_DEA <- ("~/Documents/multiome_tonsil_Lucia/results/R_objects/19.tonsil_multiome_bcell_level_1_Linkpeak_DARs_DEA.rds")
path_to_obj_links <- ("~/Documents/multiome_tonsil_Lucia/results/R_objects/19.tonsil_multiome_bcell_level_1_Linkpeak.rds")
path_to_markers<-("~/Documents/multiome_tonsil_Lucia/results/tables/18_tonsil_markers_level_1.csv")
path_to_join_link_DARs_DEA<- ("~/Documents/multiome_tonsil_Lucia/results/tables/19.df_joint_link_DARs_DEA_level_1.csv")
path_to_join_link_DARs <- ("~/Documents/multiome_tonsil_Lucia/results/tables/19.df_joint_link_DARs_level_1.csv")
path_to_DARs<-("~/Documents/multiome_tonsil_Lucia/results/tables/19.df_DARs_level_1.csv")
tonsil_wnn_bcell_links_DARs_DEA <- readRDS(path_to_obj_links_DARs_DEA)
tonsil_wnn_bcell_links <- readRDS(path_to_obj_links)
tonsil_DARs<-read_csv(path_to_DARs)
## Rows: 7837 Columns: 10
## ── Column specification ────────────────────────────────────────────────────────
## Delimiter: ","
## chr (3): cluster, gene, chrom
## dbl (7): p_val, avg_log2FC, pct.1, pct.2, p_val_adj, start, end
##
## ℹ Use `spec()` to retrieve the full column specification for this data.
## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
tonsil_markers<-read_csv(path_to_markers)
## New names:
## * `` -> ...1
## Rows: 4431 Columns: 8── Column specification ────────────────────────────────────────────────────────
## Delimiter: ","
## chr (2): ...1, gene
## dbl (6): p_val, avg_log2FC, pct.1, pct.2, p_val_adj, cluster
## ℹ Use `spec()` to retrieve the full column specification for this data.
## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
df_link_DARs<-read_csv(path_to_join_link_DARs)
## Rows: 568 Columns: 18
## ── Column specification ────────────────────────────────────────────────────────
## Delimiter: ","
## chr (5): seqnames, strand, gene, peak, cluster
## dbl (13): start, end, width, score, zscore, pvalue, p_val, avg_log2FC, pct.1...
##
## ℹ Use `spec()` to retrieve the full column specification for this data.
## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
df_link_DARs_DEA<- read_csv(path_to_join_link_DARs_DEA)
## Rows: 542 Columns: 24
## ── Column specification ────────────────────────────────────────────────────────
## Delimiter: ","
## chr (6): seqnames, strand, gene, peak, cluster, p_val.rna
## dbl (18): start, end, width, score, zscore, pvalue, p_val.dars, avg_log2FC.d...
##
## ℹ Use `spec()` to retrieve the full column specification for this data.
## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
Idents(tonsil_wnn_bcell_links)<-"wsnn_res.0.05"
new.cluster.ids <- c("NBC","MBC", "GC/DZ", "GC/LZ","PC")
names(new.cluster.ids) <- levels(tonsil_wnn_bcell_links)
tonsil_wnn_bcell_links <- RenameIdents(tonsil_wnn_bcell_links, new.cluster.ids)
tonsil_wnn_bcell_links[["annotation_level_1"]] <- Idents(object = tonsil_wnn_bcell_links)
Idents(tonsil_wnn_bcell_links_DARs_DEA)<-Idents(tonsil_wnn_bcell_links)
DimPlot(tonsil_wnn_bcell_links,label = TRUE, reduction = "wnn.umap", pt.size = 0.5,cols = c("#a6cee3", "#1f78b4","#b2df8a",
"#33a02c", "#fb9a99","#e31a1c")) + ggtitle("Joint UMAP")+NoLegend()
df_linkpeak<-as.data.frame(Links(tonsil_wnn_bcell_links))
df_linkpeak
## seqnames start end width strand score gene
## 1 chr3 278439 187745727 187467289 * 0.12420443 BCL6
## 2 chr3 468336 187745727 187277392 * 0.05106386 BCL6
## 3 chr3 1381223 187745727 186364505 * 0.12093024 BCL6
## 4 chr3 4101155 187745727 183644573 * 0.10074727 BCL6
## 5 chr3 4493153 187745727 183252575 * 0.12165464 BCL6
## 6 chr3 4503337 187745727 183242391 * 0.16531584 BCL6
## 7 chr3 4978517 187745727 182767211 * -0.10183644 BCL6
## 8 chr3 4984157 187745727 182761571 * -0.05603020 BCL6
## 9 chr3 5178261 187745727 182567467 * 0.11140400 BCL6
## 10 chr3 5181779 187745727 182563949 * 0.14019319 BCL6
## 11 chr3 5182996 187745727 182562732 * 0.10231237 BCL6
## 12 chr3 5185250 187745727 182560478 * 0.10819853 BCL6
## 13 chr3 5186282 187745727 182559446 * 0.08941540 BCL6
## 14 chr3 8501630 187745727 179244098 * 0.12940571 BCL6
## 15 chr3 8658427 187745727 179087301 * 0.11876204 BCL6
## 16 chr3 8953511 187745727 178792217 * 0.06371650 BCL6
## 17 chr3 8955102 187745727 178790626 * 0.10779858 BCL6
## 18 chr3 9644622 187745727 178101106 * 0.08273417 BCL6
## 19 chr3 9653316 187745727 178092412 * 0.18594569 BCL6
## 20 chr3 9721444 187745727 178024284 * 0.12720438 BCL6
## 21 chr3 9750244 187745727 177995484 * 0.14644923 BCL6
## 22 chr3 9752268 187745727 177993460 * 0.19832850 BCL6
## 23 chr3 9766337 187745727 177979391 * 0.12546741 BCL6
## 24 chr3 9769748 187745727 177975980 * 0.12959334 BCL6
## 25 chr3 9780111 187745727 177965617 * 0.15888561 BCL6
## 26 chr3 9986908 187745727 177758820 * 0.11355269 BCL6
## 27 chr3 10171075 187745727 177574653 * 0.10545068 BCL6
## 28 chr3 10225743 187745727 177519985 * 0.18425320 BCL6
## 29 chr3 10390009 187745727 177355719 * 0.12267436 BCL6
## 30 chr3 11549769 187745727 176195959 * 0.10556980 BCL6
## 31 chr3 11550399 187745727 176195329 * 0.07381956 BCL6
## 32 chr3 11599267 187745727 176146461 * 0.13090159 BCL6
## 33 chr3 11601747 187745727 176143981 * 0.23039643 BCL6
## 34 chr3 11603020 187745727 176142708 * 0.12396299 BCL6
## 35 chr3 11643233 187745727 176102495 * 0.14624511 BCL6
## 36 chr3 11719598 187745727 176026130 * 0.19999421 BCL6
## 37 chr3 11770307 187745727 175975421 * 0.12227622 BCL6
## 38 chr3 12560746 187745727 175184982 * 0.12012116 BCL6
## 39 chr3 12661580 187745727 175084148 * 0.06593177 BCL6
## 40 chr3 12663692 187745727 175082036 * 0.11906539 BCL6
## 41 chr3 12749410 187745727 174996318 * 0.13661875 BCL6
## 42 chr3 12785260 187745727 174960468 * 0.11330570 BCL6
## 43 chr3 12818848 187745727 174926880 * 0.13564099 BCL6
## 44 chr3 12868739 187745727 174876989 * 0.13089782 BCL6
## 45 chr3 12881988 187745727 174863740 * 0.11086491 BCL6
## 46 chr3 12884574 187745727 174861154 * 0.06582072 BCL6
## 47 chr3 12885735 187745727 174859993 * 0.16571104 BCL6
## 48 chr3 12889411 187745727 174856317 * 0.08391334 BCL6
## 49 chr3 13012451 187745727 174733277 * 0.09050884 BCL6
## 50 chr3 13015981 187745727 174729747 * 0.12443130 BCL6
## 51 chr3 13332556 187745727 174413172 * 0.14929028 BCL6
## 52 chr3 13415700 187745727 174330028 * 0.09935844 BCL6
## 53 chr3 13420235 187745727 174325493 * 0.14193428 BCL6
## 54 chr3 14175725 187745727 173570003 * 0.11281473 BCL6
## 55 chr3 14226172 187745727 173519556 * 0.05928543 BCL6
## 56 chr3 14229122 187745727 173516606 * 0.10511776 BCL6
## 57 chr3 14319769 187745727 173425959 * 0.12533564 BCL6
## 58 chr3 14380167 187745727 173365561 * 0.12386692 BCL6
## 59 chr3 14402836 187745727 173342892 * 0.15238202 BCL6
## 60 chr3 14407378 187745727 173338350 * 0.16099584 BCL6
## 61 chr3 14428414 187745727 173317314 * 0.16993442 BCL6
## 62 chr3 14673716 187745727 173072012 * 0.08119732 BCL6
## 63 chr3 14685319 187745727 173060409 * 0.07179120 BCL6
## 64 chr3 14686547 187745727 173059181 * 0.08018997 BCL6
## 65 chr3 14687590 187745727 173058138 * 0.20742249 BCL6
## 66 chr3 14688991 187745727 173056737 * 0.20557158 BCL6
## 67 chr3 14691355 187745727 173054373 * 0.13915440 BCL6
## 68 chr3 14698843 187745727 173046885 * 0.12357962 BCL6
## 69 chr3 14721498 187745727 173024230 * 0.09540089 BCL6
## 70 chr3 14780998 187745727 172964730 * 0.08881408 BCL6
## 71 chr3 14947826 187745727 172797902 * 0.14227493 BCL6
## 72 chr3 14989206 187745727 172756522 * 0.12111000 BCL6
## 73 chr3 15098764 187745727 172646964 * 0.11620667 BCL6
## 74 chr3 15206503 187745727 172539225 * 0.14556916 BCL6
## 75 chr3 15217804 187745727 172527924 * 0.12487846 BCL6
## 76 chr3 15295205 187745727 172450523 * 0.13027310 BCL6
## 77 chr3 15328160 187745727 172417568 * 0.12861809 BCL6
## 78 chr3 15330408 187745727 172415320 * 0.05881066 BCL6
## 79 chr3 15345513 187745727 172400215 * 0.11967146 BCL6
## 80 chr3 15361782 187745727 172383946 * 0.16300351 BCL6
## 81 chr3 15601666 187745727 172144062 * 0.13289776 BCL6
## 82 chr3 16252834 187745727 171492894 * 0.12645335 BCL6
## 83 chr3 16304704 187745727 171441024 * 0.05465900 BCL6
## 84 chr3 16371505 187745727 171374223 * 0.10611921 BCL6
## 85 chr3 16372623 187745727 171373105 * 0.07749422 BCL6
## 86 chr3 16373518 187745727 171372210 * 0.12883658 BCL6
## 87 chr3 16377248 187745727 171368480 * 0.11951804 BCL6
## 88 chr3 16380293 187745727 171365435 * 0.11949900 BCL6
## 89 chr3 16431258 187745727 171314470 * 0.18992269 BCL6
## 90 chr3 16433625 187745727 171312103 * 0.20536053 BCL6
## 91 chr3 16441687 187745727 171304041 * 0.05934309 BCL6
## 92 chr3 16443325 187745727 171302403 * 0.12496209 BCL6
## 93 chr3 16447289 187745727 171298439 * 0.17273437 BCL6
## 94 chr3 16448764 187745727 171296964 * 0.08865334 BCL6
## 95 chr3 16450503 187745727 171295225 * 0.08430254 BCL6
## 96 chr3 16451329 187745727 171294399 * 0.07865517 BCL6
## 97 chr3 16468132 187745727 171277596 * 0.10160789 BCL6
## 98 chr3 16510026 187745727 171235702 * 0.12500945 BCL6
## 99 chr3 16511144 187745727 171234584 * 0.14753640 BCL6
## 100 chr3 16512760 187745727 171232968 * 0.19182073 BCL6
## 101 chr3 16516046 187745727 171229682 * 0.12297851 BCL6
## 102 chr3 16516887 187745727 171228841 * 0.08792348 BCL6
## 103 chr3 16520933 187745727 171224795 * 0.11595034 BCL6
## 104 chr3 16522828 187745727 171222900 * 0.09565661 BCL6
## 105 chr3 16589991 187745727 171155737 * 0.10015575 BCL6
## 106 chr3 16801576 187745727 170944152 * 0.10872702 BCL6
## 107 chr3 16884755 187745727 170860973 * 0.13326658 BCL6
## 108 chr3 16893735 187745727 170851993 * 0.12629506 BCL6
## 109 chr3 17740820 187745727 170004908 * 0.08414279 BCL6
## 110 chr3 18220313 187745727 169525415 * 0.08274737 BCL6
## 111 chr3 18223770 187745727 169521958 * 0.13848400 BCL6
## 112 chr3 18225606 187745727 169520122 * 0.07150263 BCL6
## 113 chr3 18499482 187745727 169246246 * 0.12370834 BCL6
## 114 chr3 18747210 187745727 168998518 * 0.12480613 BCL6
## 115 chr3 19248297 187745727 168497431 * 0.09371126 BCL6
## 116 chr3 19342592 187745727 168403136 * 0.10323073 BCL6
## 117 chr3 19344038 187745727 168401690 * 0.12816640 BCL6
## 118 chr3 19348256 187745727 168397472 * 0.17600340 BCL6
## 119 chr3 19362680 187745727 168383048 * 0.12635411 BCL6
## 120 chr3 19540051 187745727 168205677 * 0.10597355 BCL6
## 121 chr3 19543102 187745727 168202626 * 0.10584036 BCL6
## 122 chr3 20185880 187745727 167559848 * 0.12963920 BCL6
## 123 chr3 23160828 187745727 164584900 * 0.08639544 BCL6
## 124 chr3 23162502 187745727 164583226 * 0.24537545 BCL6
## 125 chr3 23341465 187745727 164404263 * 0.09433871 BCL6
## 126 chr3 23389597 187745727 164356131 * 0.13251093 BCL6
## 127 chr3 23519669 187745727 164226059 * 0.10628175 BCL6
## 128 chr3 23650472 187745727 164095256 * 0.08067603 BCL6
## 129 chr3 23653890 187745727 164091838 * 0.11833487 BCL6
## 130 chr3 23654763 187745727 164090965 * 0.07322327 BCL6
## 131 chr3 23659109 187745727 164086619 * 0.13621200 BCL6
## 132 chr3 23724047 187745727 164021681 * 0.11907477 BCL6
## 133 chr3 23761538 187745727 163984190 * 0.21469823 BCL6
## 134 chr3 23763315 187745727 163982413 * 0.08060742 BCL6
## 135 chr3 23857426 187745727 163888302 * 0.10454917 BCL6
## 136 chr3 23867546 187745727 163878182 * 0.05752771 BCL6
## 137 chr3 23877122 187745727 163868606 * 0.11935545 BCL6
## 138 chr3 23952651 187745727 163793077 * 0.11503036 BCL6
## 139 chr3 24494921 187745727 163250807 * 0.15081997 BCL6
## 140 chr3 24496705 187745727 163249023 * 0.08832493 BCL6
## 141 chr3 24508047 187745727 163237681 * 0.17246409 BCL6
## 142 chr3 25664466 187745727 162081262 * 0.12007445 BCL6
## 143 chr3 25782741 187745727 161962987 * 0.13756316 BCL6
## 144 chr3 27360403 187745727 160385325 * 0.15439232 BCL6
## 145 chr3 30627669 187745727 157118059 * 0.10387235 BCL6
## 146 chr3 30636865 187745727 157108863 * 0.07988567 BCL6
## 147 chr3 30643115 187745727 157102613 * 0.12201049 BCL6
## 148 chr3 31477723 187745727 156268005 * 0.11066381 BCL6
## 149 chr3 31532877 187745727 156212851 * 0.15471452 BCL6
## 150 chr3 31567094 187745727 156178634 * 0.08343829 BCL6
## 151 chr3 31568551 187745727 156177177 * 0.09824193 BCL6
## 152 chr3 31710645 187745727 156035083 * 0.12772972 BCL6
## 153 chr3 31853595 187745727 155892133 * 0.09970348 BCL6
## 154 chr3 31918010 187745727 155827718 * 0.17682251 BCL6
## 155 chr3 31925266 187745727 155820462 * 0.10111183 BCL6
## 156 chr3 31926592 187745727 155819136 * 0.09105229 BCL6
## 157 chr3 31930154 187745727 155815574 * 0.16005644 BCL6
## 158 chr3 31947312 187745727 155798416 * 0.13802333 BCL6
## 159 chr3 31952976 187745727 155792752 * 0.19176282 BCL6
## 160 chr3 31961193 187745727 155784535 * 0.17363988 BCL6
## 161 chr3 32026572 187745727 155719156 * 0.11092117 BCL6
## 162 chr3 32078093 187745727 155667635 * 0.13078967 BCL6
## 163 chr3 33114483 187745727 154631245 * 0.13224525 BCL6
## 164 chr3 33220388 187745727 154525340 * 0.09012131 BCL6
## 165 chr3 33488638 187745727 154257090 * 0.06056629 BCL6
## 166 chr3 33491006 187745727 154254722 * 0.19247385 BCL6
## 167 chr3 33494349 187745727 154251379 * 0.10101648 BCL6
## 168 chr3 33659245 187745727 154086483 * 0.12984593 BCL6
## 169 chr3 33660458 187745727 154085270 * 0.10246912 BCL6
## 170 chr3 34019619 187745727 153726109 * 0.05939593 BCL6
## 171 chr3 34021803 187745727 153723925 * 0.17464502 BCL6
## 172 chr3 34057009 187745727 153688719 * 0.10348403 BCL6
## 173 chr3 34106981 187745727 153638747 * 0.08915435 BCL6
## 174 chr3 34340964 187745727 153404764 * 0.08956973 BCL6
## 175 chr3 36675798 187745727 151069930 * 0.06974460 BCL6
## 176 chr3 36677485 187745727 151068243 * 0.11375027 BCL6
## 177 chr3 36680024 187745727 151065704 * 0.05273597 BCL6
## 178 chr3 36891664 187745727 150854064 * 0.16558715 BCL6
## 179 chr3 36918857 187745727 150826871 * 0.07389962 BCL6
## 180 chr3 36923242 187745727 150822486 * 0.15900350 BCL6
## 181 chr3 36924944 187745727 150820784 * 0.12386424 BCL6
## 182 chr3 36930636 187745727 150815092 * 0.12074754 BCL6
## 183 chr3 36993153 187745727 150752575 * 0.12953283 BCL6
## 184 chr3 37996947 187745727 149748781 * 0.08960355 BCL6
## 185 chr3 39086328 187745727 148659400 * 0.13724637 BCL6
## 186 chr3 39148145 187745727 148597583 * 0.15923370 BCL6
## 187 chr3 39255481 187745727 148490247 * 0.19411560 BCL6
## 188 chr3 39288506 187745727 148457222 * 0.10628655 BCL6
## 189 chr3 39383837 187745727 148361891 * 0.14951316 BCL6
## 190 chr3 39406636 187745727 148339092 * 0.11378735 BCL6
## 191 chr3 39750876 187745727 147994852 * 0.11559521 BCL6
## 192 chr3 39752209 187745727 147993519 * 0.07481330 BCL6
## 193 chr3 39753287 187745727 147992441 * 0.11746189 BCL6
## 194 chr3 39754657 187745727 147991071 * 0.08953363 BCL6
## 195 chr3 39755353 187745727 147990375 * 0.11303653 BCL6
## 196 chr3 39772703 187745727 147973025 * 0.09484675 BCL6
## 197 chr3 39794472 187745727 147951256 * 0.08423091 BCL6
## 198 chr3 39809983 187745727 147935745 * 0.21952252 BCL6
## 199 chr3 39881937 187745727 147863791 * 0.14640025 BCL6
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## 205 chr3 41961779 187745727 145783949 * 0.11040243 BCL6
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## 207 chr3 42127291 187745727 145618437 * 0.10496603 BCL6
## 208 chr3 42600584 187745727 145145144 * 0.12482479 BCL6
## 209 chr3 42612724 187745727 145133004 * 0.17507178 BCL6
## 210 chr3 42661066 187745727 145084662 * 0.06957106 BCL6
## 211 chr3 42663962 187745727 145081766 * 0.20793774 BCL6
## 212 chr3 43073892 187745727 144671836 * 0.12457099 BCL6
## 213 chr3 43091696 187745727 144654032 * 0.11216627 BCL6
## 214 chr3 43892461 187745727 143853267 * 0.17150685 BCL6
## 215 chr3 43894378 187745727 143851350 * 0.17744236 BCL6
## 216 chr3 43926227 187745727 143819501 * 0.05474407 BCL6
## 217 chr3 43998717 187745727 143747011 * 0.19439297 BCL6
## 218 chr3 44003912 187745727 143741816 * 0.07568137 BCL6
## 219 chr3 44004981 187745727 143740747 * 0.16907716 BCL6
## 220 chr3 44121388 187745727 143624340 * 0.05206956 BCL6
## 221 chr3 44121724 187745727 143624004 * 0.05285859 BCL6
## 222 chr3 44954243 187745727 142791485 * 0.11379323 BCL6
## 223 chr3 44955136 187745727 142790592 * 0.07373167 BCL6
## 224 chr3 44956291 187745727 142789437 * 0.12454559 BCL6
## 225 chr3 45689063 187745727 142056665 * 0.13807428 BCL6
## 226 chr3 45889301 187745727 141856427 * 0.14349313 BCL6
## 227 chr3 46092611 187745727 141653117 * 0.17237954 BCL6
## 228 chr3 46187072 187745727 141558656 * 0.11433124 BCL6
## 229 chr3 46537972 187745727 141207756 * 0.08075335 BCL6
## 230 chr3 46927197 187745727 140818531 * 0.13922795 BCL6
## 231 chr3 46929543 187745727 140816185 * 0.07435036 BCL6
## 232 chr3 46972565 187745727 140773163 * 0.07821972 BCL6
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## 234 chr3 47141680 187745727 140604048 * 0.14196737 BCL6
## 235 chr3 47163900 187745727 140581828 * 0.13937482 BCL6
## 236 chr3 47175774 187745727 140569954 * 0.18099608 BCL6
## 237 chr3 47289549 187745727 140456179 * 0.05667620 BCL6
## 238 chr3 47291916 187745727 140453812 * 0.11495617 BCL6
## 239 chr3 47491660 187745727 140254068 * 0.15135880 BCL6
## 240 chr3 48188118 187745727 139557610 * 0.14092672 BCL6
## 241 chr3 48222950 187745727 139522778 * 0.18939068 BCL6
## 242 chr3 48227013 187745727 139518715 * 0.09778080 BCL6
## 243 chr3 48233627 187745727 139512101 * 0.05492176 BCL6
## 244 chr3 48558243 187745727 139187485 * 0.08504398 BCL6
## 245 chr3 48663885 187745727 139081843 * 0.13605221 BCL6
## 246 chr3 48685815 187745727 139059913 * 0.14107595 BCL6
## 247 chr3 48903432 187745727 138842296 * 0.10142713 BCL6
## 248 chr3 48919061 187745727 138826667 * 0.12657444 BCL6
## 249 chr3 49021403 187745727 138724325 * 0.20537069 BCL6
## 250 chr3 49470126 187745727 138275602 * 0.13165580 BCL6
## 251 chr3 49805310 187745727 137940418 * 0.12192793 BCL6
## 252 chr3 49827535 187745727 137918193 * 0.08725937 BCL6
## 253 chr3 49899974 187745727 137845754 * 0.05042798 BCL6
## 254 chr3 49931098 187745727 137814630 * 0.08335763 BCL6
## 255 chr3 49942635 187745727 137803093 * 0.14158881 BCL6
## 256 chr3 49945798 187745727 137799930 * 0.14304482 BCL6
## 257 chr3 49947028 187745727 137798700 * 0.24539113 BCL6
## 258 chr3 49948090 187745727 137797638 * 0.10882696 BCL6
## 259 chr3 49957511 187745727 137788217 * 0.06478375 BCL6
## 260 chr3 50340005 187745727 137405723 * 0.10860147 BCL6
## 261 chr3 51296487 187745727 136449241 * 0.07599911 BCL6
## 262 chr3 51297365 187745727 136448363 * 0.13980349 BCL6
## 263 chr3 51942237 187745727 135803491 * 0.12507065 BCL6
## 264 chr3 52225659 187745727 135520069 * 0.18885104 BCL6
## 265 chr3 53061753 187745727 134683975 * 0.08991056 BCL6
## 266 chr3 53063470 187745727 134682258 * 0.14484976 BCL6
## 267 chr3 53067673 187745727 134678055 * 0.08650176 BCL6
## 268 chr3 53110354 187745727 134635374 * 0.06269968 BCL6
## 269 chr3 53158865 187745727 134586863 * 0.09254501 BCL6
## 270 chr3 53161551 187745727 134584177 * 0.13535173 BCL6
## 271 chr3 53167165 187745727 134578563 * 0.18347855 BCL6
## 272 chr3 53172403 187745727 134573325 * 0.14441429 BCL6
## 273 chr3 53174469 187745727 134571259 * 0.14526375 BCL6
## 274 chr3 53192244 187745727 134553484 * 0.17615395 BCL6
## 275 chr3 53195970 187745727 134549758 * 0.11941046 BCL6
## 276 chr3 53197028 187745727 134548700 * 0.12311984 BCL6
## 277 chr3 53199875 187745727 134545853 * 0.08527538 BCL6
## 278 chr3 53212712 187745727 134533016 * 0.12506424 BCL6
## 279 chr3 53219952 187745727 134525776 * 0.08644708 BCL6
## 280 chr3 53249757 187745727 134495971 * 0.10331036 BCL6
## 281 chr3 53843759 187745727 133901969 * 0.15120151 BCL6
## 282 chr3 54121872 187745727 133623856 * 0.20966418 BCL6
## 283 chr3 55485323 187745727 132260405 * 0.13837263 BCL6
## 284 chr3 55488728 187745727 132257000 * 0.13133690 BCL6
## 285 chr3 55592497 187745727 132153231 * 0.14608657 BCL6
## 286 chr3 55604830 187745727 132140898 * 0.21524801 BCL6
## 287 chr3 55686547 187745727 132059181 * 0.09711362 BCL6
## 288 chr3 55690997 187745727 132054731 * 0.15321209 BCL6
## 289 chr3 55712676 187745727 132033052 * 0.07797164 BCL6
## 290 chr3 55716914 187745727 132028814 * 0.07211204 BCL6
## 291 chr3 55718547 187745727 132027181 * 0.08598256 BCL6
## 292 chr3 55721904 187745727 132023824 * 0.16295692 BCL6
## 293 chr3 55724931 187745727 132020797 * 0.18396296 BCL6
## 294 chr3 55726063 187745727 132019665 * 0.17058047 BCL6
## 295 chr3 55728801 187745727 132016927 * 0.16290035 BCL6
## 296 chr3 56302574 187745727 131443154 * 0.05374880 BCL6
## 297 chr3 56303647 187745727 131442081 * 0.14906348 BCL6
## 298 chr3 56321871 187745727 131423857 * 0.10610823 BCL6
## 299 chr3 57015001 187745727 130730727 * 0.08866581 BCL6
## 300 chr3 57582868 187745727 130162860 * 0.11456627 BCL6
## 301 chr3 57587903 187745727 130157825 * 0.07607785 BCL6
## 302 chr3 58338562 187745727 129407166 * 0.16772946 BCL6
## 303 chr3 58349634 187745727 129396094 * 0.21657639 BCL6
## 304 chr3 58352117 187745727 129393611 * 0.08648293 BCL6
## 305 chr3 58355230 187745727 129390498 * 0.10923952 BCL6
## 306 chr3 58532110 187745727 129213618 * 0.06136041 BCL6
## 307 chr3 58754249 187745727 128991479 * 0.07859765 BCL6
## 308 chr3 58824794 187745727 128920934 * 0.10245847 BCL6
## 309 chr3 58857793 187745727 128887935 * 0.20617622 BCL6
## 310 chr3 58861773 187745727 128883955 * 0.12991259 BCL6
## 311 chr3 58865798 187745727 128879930 * 0.11096917 BCL6
## 312 chr3 58868204 187745727 128877524 * 0.13712884 BCL6
## 313 chr3 58952816 187745727 128792912 * 0.22055519 BCL6
## 314 chr3 58955408 187745727 128790320 * 0.05437414 BCL6
## 315 chr3 59049816 187745727 128695912 * 0.13526652 BCL6
## 316 chr3 59058023 187745727 128687705 * 0.12995512 BCL6
## 317 chr3 59247082 187745727 128498646 * 0.17573368 BCL6
## 318 chr3 60079182 187745727 127666546 * 0.09164767 BCL6
## 319 chr3 60081211 187745727 127664517 * 0.14998867 BCL6
## 320 chr3 61801176 187745727 125944552 * 0.09038091 BCL6
## 321 chr3 61802543 187745727 125943185 * 0.11397268 BCL6
## 322 chr3 62287554 187745727 125458174 * 0.11553693 BCL6
## 323 chr3 62493566 187745727 125252162 * 0.12459726 BCL6
## 324 chr3 62502971 187745727 125242757 * 0.23084245 BCL6
## 325 chr3 62625568 187745727 125120160 * 0.05692697 BCL6
## 326 chr3 62666019 187745727 125079709 * 0.15672179 BCL6
## 327 chr3 62667991 187745727 125077737 * 0.16540029 BCL6
## 328 chr3 62672739 187745727 125072989 * 0.17860452 BCL6
## 329 chr3 62674072 187745727 125071656 * 0.15226053 BCL6
## 330 chr3 62675357 187745727 125070371 * 0.10215281 BCL6
## 331 chr3 62723039 187745727 125022689 * 0.27093795 BCL6
## 332 chr3 62724661 187745727 125021067 * 0.12070860 BCL6
## 333 chr3 62732126 187745727 125013602 * 0.07691323 BCL6
## 334 chr3 62755314 187745727 124990414 * 0.12001548 BCL6
## 335 chr3 62758375 187745727 124987353 * 0.10307296 BCL6
## 336 chr3 62796276 187745727 124949452 * 0.10710748 BCL6
## 337 chr3 62809481 187745727 124936247 * 0.06261301 BCL6
## 338 chr3 62816432 187745727 124929296 * 0.16426333 BCL6
## 339 chr3 62818256 187745727 124927472 * 0.23541748 BCL6
## 340 chr3 62823745 187745727 124921983 * 0.11632987 BCL6
## 341 chr3 62825010 187745727 124920718 * 0.14102573 BCL6
## 342 chr3 62833673 187745727 124912055 * 0.08497890 BCL6
## 343 chr3 62835564 187745727 124910164 * 0.11130440 BCL6
## 344 chr3 62837284 187745727 124908444 * 0.07615494 BCL6
## 345 chr3 62874477 187745727 124871251 * 0.19090939 BCL6
## 346 chr3 62876206 187745727 124869522 * 0.10510391 BCL6
## 347 chr3 62954571 187745727 124791157 * 0.15668223 BCL6
## 348 chr3 63047072 187745727 124698656 * 0.11454329 BCL6
## 349 chr3 64038424 187745727 123707304 * 0.07005682 BCL6
## 350 chr3 64039898 187745727 123705830 * 0.18143049 BCL6
## 351 chr3 64106029 187745727 123639699 * 0.12031652 BCL6
## 352 chr3 66267137 187745727 121478591 * 0.14898982 BCL6
## 353 chr3 66467251 187745727 121278477 * 0.11806940 BCL6
## 354 chr3 66468396 187745727 121277332 * 0.08205657 BCL6
## 355 chr3 66469368 187745727 121276360 * 0.13044258 BCL6
## 356 chr3 66488631 187745727 121257097 * 0.07701341 BCL6
## 357 chr3 66490091 187745727 121255637 * 0.13137838 BCL6
## 358 chr3 66495718 187745727 121250010 * 0.07826001 BCL6
## 359 chr3 66496792 187745727 121248936 * 0.09013302 BCL6
## 360 chr3 66500725 187745727 121245003 * 0.17472803 BCL6
## 361 chr3 66531582 187745727 121214146 * 0.12982000 BCL6
## 362 chr3 66533619 187745727 121212109 * 0.11997909 BCL6
## 363 chr3 66553322 187745727 121192406 * 0.15181824 BCL6
## 364 chr3 66573932 187745727 121171796 * 0.24792596 BCL6
## 365 chr3 66577824 187745727 121167904 * 0.10647443 BCL6
## 366 chr3 66583142 187745727 121162586 * 0.19565801 BCL6
## 367 chr3 66638799 187745727 121106929 * 0.09989324 BCL6
## 368 chr3 66972106 187745727 120773622 * 0.11028600 BCL6
## 369 chr3 66998224 187745727 120747504 * 0.13972107 BCL6
## 370 chr3 67012755 187745727 120732973 * 0.10204784 BCL6
## 371 chr3 67016536 187745727 120729192 * 0.15738066 BCL6
## 372 chr3 67045787 187745727 120699941 * 0.22802327 BCL6
## 373 chr3 67048383 187745727 120697345 * 0.17774847 BCL6
## 374 chr3 67067347 187745727 120678381 * 0.09194827 BCL6
## 375 chr3 67068300 187745727 120677428 * 0.07104958 BCL6
## 376 chr3 67069519 187745727 120676209 * 0.11661103 BCL6
## 377 chr3 67075733 187745727 120669995 * 0.16115225 BCL6
## 378 chr3 67076797 187745727 120668931 * 0.05682090 BCL6
## 379 chr3 67079158 187745727 120666570 * 0.05684883 BCL6
## 380 chr3 67678857 187745727 120066871 * 0.11145640 BCL6
## 381 chr3 67898331 187745727 119847397 * 0.21947578 BCL6
## 382 chr3 69715364 187745727 118030364 * 0.07128041 BCL6
## 383 chr3 69847380 187745727 117898348 * 0.07021261 BCL6
## 384 chr3 69857323 187745727 117888405 * 0.07182943 BCL6
## 385 chr3 69860914 187745727 117884814 * 0.10020973 BCL6
## 386 chr3 69867090 187745727 117878638 * 0.07728843 BCL6
## 387 chr3 69881007 187745727 117864721 * 0.10555944 BCL6
## 388 chr3 69881883 187745727 117863845 * 0.08813811 BCL6
## 389 chr3 69887281 187745727 117858447 * 0.07118478 BCL6
## 390 chr3 69891819 187745727 117853909 * 0.06364842 BCL6
## 391 chr3 69986505 187745727 117759223 * 0.07934147 BCL6
## 392 chr3 70021491 187745727 117724237 * 0.10576535 BCL6
## 393 chr3 71118162 187745727 116627566 * 0.18354410 BCL6
## 394 chr3 71130008 187745727 116615720 * 0.11276049 BCL6
## 395 chr3 71391860 187745727 116353868 * 0.08757837 BCL6
## 396 chr3 71442563 187745727 116303165 * 0.10903093 BCL6
## 397 chr3 71502266 187745727 116243462 * 0.11368655 BCL6
## 398 chr3 71543022 187745727 116202706 * 0.15414645 BCL6
## 399 chr3 71554797 187745727 116190931 * 0.13758321 BCL6
## 400 chr3 71564731 187745727 116180997 * 0.21463387 BCL6
## 401 chr3 71582866 187745727 116162862 * 0.16666237 BCL6
## 402 chr3 71972262 187745727 115773466 * 0.08873259 BCL6
## 403 chr3 71978400 187745727 115767328 * 0.12542793 BCL6
## 404 chr3 71985176 187745727 115760552 * 0.22050184 BCL6
## 405 chr3 71986702 187745727 115759026 * 0.07757131 BCL6
## 406 chr3 72078520 187745727 115667208 * 0.23644277 BCL6
## 407 chr3 72080279 187745727 115665449 * 0.06754900 BCL6
## 408 chr3 72081593 187745727 115664135 * 0.13253938 BCL6
## 409 chr3 72086225 187745727 115659503 * 0.09794948 BCL6
## 410 chr3 72093696 187745727 115652032 * 0.12765131 BCL6
## 411 chr3 72095757 187745727 115649971 * 0.25208755 BCL6
## 412 chr3 72099418 187745727 115646310 * 0.23007190 BCL6
## 413 chr3 72101317 187745727 115644411 * 0.22265155 BCL6
## 414 chr3 72135237 187745727 115610491 * 0.11184935 BCL6
## 415 chr3 72138395 187745727 115607333 * 0.14733438 BCL6
## 416 chr3 72147721 187745727 115598007 * 0.12046131 BCL6
## 417 chr3 72158346 187745727 115587382 * 0.11387832 BCL6
## 418 chr3 72164198 187745727 115581530 * 0.23624349 BCL6
## 419 chr3 72185854 187745727 115559874 * 0.19927460 BCL6
## 420 chr3 72187020 187745727 115558708 * 0.10954573 BCL6
## 421 chr3 72232851 187745727 115512877 * 0.12211811 BCL6
## 422 chr3 72255862 187745727 115489866 * 0.12356252 BCL6
## 423 chr3 72310410 187745727 115435318 * 0.14773101 BCL6
## 424 chr3 72535858 187745727 115209870 * 0.07571237 BCL6
## 425 chr3 72537792 187745727 115207936 * 0.12383390 BCL6
## 426 chr3 72822336 187745727 114923392 * 0.09349375 BCL6
## 427 chr3 72976588 187745727 114769140 * 0.07725642 BCL6
## 428 chr3 73448944 187745727 114296784 * 0.15723321 BCL6
## 429 chr3 73449923 187745727 114295805 * 0.09201926 BCL6
## 430 chr3 73451524 187745727 114294204 * 0.15330644 BCL6
## 431 chr3 78130956 187745727 109614772 * 0.09028354 BCL6
## 432 chr3 78133023 187745727 109612705 * 0.05078305 BCL6
## 433 chr3 81793452 187745727 105952276 * 0.09832842 BCL6
## 434 chr3 88009025 187745727 99736703 * 0.18441269 BCL6
## 435 chr3 88019456 187745727 99726272 * 0.17395844 BCL6
## 436 chr3 88149804 187745727 99595924 * 0.10327816 BCL6
## 437 chr3 97762107 187745727 89983621 * 0.09435352 BCL6
## 438 chr3 99012431 187745727 88733297 * 0.19606941 BCL6
## 439 chr3 100104011 187745727 87641717 * 0.11401328 BCL6
## 440 chr3 101577410 187745727 86168318 * 0.12342263 BCL6
## 441 chr3 101676621 187745727 86069107 * 0.13986163 BCL6
## 442 chr3 101725031 187745727 86020697 * 0.12005557 BCL6
## 443 chr3 101792067 187745727 85953661 * 0.12297096 BCL6
## 444 chr3 101840863 187745727 85904865 * 0.10132985 BCL6
## 445 chr3 104536965 187745727 83208763 * 0.12151262 BCL6
## 446 chr3 104547181 187745727 83198547 * 0.05344512 BCL6
## 447 chr3 105368064 187745727 82377664 * 0.16589551 BCL6
## 448 chr3 105385954 187745727 82359774 * 0.14612695 BCL6
## 449 chr3 105387708 187745727 82358020 * 0.08390427 BCL6
## 450 chr3 105823051 187745727 81922677 * 0.10739978 BCL6
## 451 chr3 106256460 187745727 81489268 * 0.12912347 BCL6
## 452 chr3 107323839 187745727 80421889 * 0.15482150 BCL6
## 453 chr3 107325512 187745727 80420216 * 0.08997555 BCL6
## 454 chr3 107328281 187745727 80417447 * 0.05343411 BCL6
## 455 chr3 107428386 187745727 80317342 * 0.13389656 BCL6
## 456 chr3 107431060 187745727 80314668 * 0.13759269 BCL6
## 457 chr3 107524116 187745727 80221612 * 0.12628576 BCL6
## 458 chr3 108125076 187745727 79620652 * 0.12582348 BCL6
## 459 chr3 108219507 187745727 79526221 * 0.08830918 BCL6
## 460 chr3 111616431 187745727 76129297 * 0.11787297 BCL6
## 461 chr3 112108952 187745727 75636776 * 0.08661694 BCL6
## 462 chr3 112111891 187745727 75633837 * 0.08081582 BCL6
## 463 chr3 112114398 187745727 75631330 * 0.22381214 BCL6
## 464 chr3 112115379 187745727 75630349 * 0.07766271 BCL6
## 465 chr3 112118165 187745727 75627563 * 0.11173514 BCL6
## 466 chr3 112120318 187745727 75625410 * 0.16606305 BCL6
## 467 chr3 112121896 187745727 75623832 * 0.21398456 BCL6
## 468 chr3 112130171 187745727 75615557 * 0.12176246 BCL6
## 469 chr3 112133275 187745727 75612453 * 0.15716690 BCL6
## 470 chr3 112136261 187745727 75609467 * 0.10244029 BCL6
## 471 chr3 112137201 187745727 75608527 * 0.11154796 BCL6
## 472 chr3 112247384 187745727 75498344 * 0.12054241 BCL6
## 473 chr3 112270380 187745727 75475348 * 0.08089350 BCL6
## 474 chr3 112297661 187745727 75448067 * 0.10558139 BCL6
## 475 chr3 112814150 187745727 74931578 * 0.15587762 BCL6
## 476 chr3 113746311 187745727 73999417 * 0.15390510 BCL6
## 477 chr3 113830527 187745727 73915201 * 0.14420294 BCL6
## 478 chr3 114008979 187745727 73736749 * 0.09458721 BCL6
## 479 chr3 114214300 187745727 73531428 * 0.14978930 BCL6
## 480 chr3 114218991 187745727 73526737 * 0.12600027 BCL6
## 481 chr3 114291251 187745727 73454477 * 0.11885197 BCL6
## 482 chr3 114427978 187745727 73317750 * 0.19169499 BCL6
## 483 chr3 114429753 187745727 73315975 * 0.09524884 BCL6
## 484 chr3 114436614 187745727 73309114 * 0.17176025 BCL6
## 485 chr3 114437597 187745727 73308131 * 0.05842162 BCL6
## 486 chr3 114447674 187745727 73298054 * 0.09739979 BCL6
## 487 chr3 114451365 187745727 73294363 * 0.17452686 BCL6
## 488 chr3 114453267 187745727 73292461 * 0.16820616 BCL6
## 489 chr3 114454590 187745727 73291138 * 0.14244862 BCL6
## 490 chr3 114460396 187745727 73285332 * 0.13930670 BCL6
## 491 chr3 114464637 187745727 73281091 * 0.10110327 BCL6
## 492 chr3 115147151 187745727 72598577 * 0.13455099 BCL6
## 493 chr3 115187007 187745727 72558721 * -0.06769532 BCL6
## 494 chr3 115651443 187745727 72094285 * 0.11851857 BCL6
## 495 chr3 115652782 187745727 72092946 * 0.14455706 BCL6
## 496 chr3 115657198 187745727 72088530 * 0.07275864 BCL6
## 497 chr3 116038448 187745727 71707280 * 0.10384583 BCL6
## 498 chr3 116886608 187745727 70859120 * 0.11097397 BCL6
## 499 chr3 117171259 187745727 70574469 * 0.11240125 BCL6
## 500 chr3 117243873 187745727 70501855 * 0.15592873 BCL6
## 501 chr3 118782899 187745727 68962829 * 0.09806063 BCL6
## 502 chr3 118792229 187745727 68953499 * 0.08529990 BCL6
## 503 chr3 119539165 187745727 68206563 * 0.14625047 BCL6
## 504 chr3 119549589 187745727 68196139 * 0.07257641 BCL6
## 505 chr3 119551844 187745727 68193884 * 0.13661914 BCL6
## 506 chr3 119552435 187745727 68193293 * 0.10821976 BCL6
## 507 chr3 119555449 187745727 68190279 * 0.09974711 BCL6
## 508 chr3 119559579 187745727 68186149 * 0.12067497 BCL6
## 509 chr3 119560283 187745727 68185445 * 0.07851989 BCL6
## 510 chr3 119562674 187745727 68183054 * 0.13607613 BCL6
## 511 chr3 119600895 187745727 68144833 * 0.13266243 BCL6
## 512 chr3 119628360 187745727 68117368 * 0.11638979 BCL6
## 513 chr3 120094876 187745727 67650852 * 0.16390905 BCL6
## 514 chr3 120101525 187745727 67644203 * 0.11403222 BCL6
## 515 chr3 120399500 187745727 67346228 * 0.10673155 BCL6
## 516 chr3 120680496 187745727 67065232 * 0.06215975 BCL6
## 517 chr3 120852541 187745727 66893187 * 0.10082053 BCL6
## 518 chr3 120908318 187745727 66837410 * 0.14966972 BCL6
## 519 chr3 121546086 187745727 66199642 * 0.13602058 BCL6
## 520 chr3 121793264 187745727 65952464 * 0.09236368 BCL6
## 521 chr3 121794622 187745727 65951106 * 0.15041834 BCL6
## 522 chr3 121809239 187745727 65936489 * 0.10304360 BCL6
## 523 chr3 121835301 187745727 65910427 * 0.11953648 BCL6
## 524 chr3 121992762 187745727 65752966 * 0.15867807 BCL6
## 525 chr3 121995347 187745727 65750381 * 0.10728385 BCL6
## 526 chr3 122067540 187745727 65678188 * 0.14858684 BCL6
## 527 chr3 122077925 187745727 65667803 * 0.13942162 BCL6
## 528 chr3 122092047 187745727 65653681 * 0.15504195 BCL6
## 529 chr3 122097371 187745727 65648357 * 0.05515149 BCL6
## 530 chr3 123111715 187745727 64634013 * 0.16798036 BCL6
## 531 chr3 123153475 187745727 64592253 * 0.20342809 BCL6
## 532 chr3 123576570 187745727 64169158 * 0.10256428 BCL6
## 533 chr3 123605556 187745727 64140172 * 0.12484853 BCL6
## 534 chr3 123610382 187745727 64135346 * 0.10545822 BCL6
## 535 chr3 123642358 187745727 64103370 * 0.10547829 BCL6
## 536 chr3 125108464 187745727 62637264 * 0.17066357 BCL6
## 537 chr3 125109693 187745727 62636035 * 0.07128555 BCL6
## 538 chr3 125120483 187745727 62625245 * 0.11438438 BCL6
## 539 chr3 125121842 187745727 62623886 * 0.07431882 BCL6
## 540 chr3 125146128 187745727 62599600 * 0.13602324 BCL6
## 541 chr3 125147461 187745727 62598267 * 0.15818882 BCL6
## 542 chr3 125148614 187745727 62597114 * 0.22417426 BCL6
## 543 chr3 125154924 187745727 62590804 * 0.16400285 BCL6
## 544 chr3 125164542 187745727 62581186 * 0.13777075 BCL6
## 545 chr3 125192314 187745727 62553414 * 0.15524422 BCL6
## 546 chr3 125349559 187745727 62396169 * 0.13263592 BCL6
## 547 chr3 125351193 187745727 62394535 * 0.18875361 BCL6
## 548 chr3 125595003 187745727 62150725 * 0.12676288 BCL6
## 549 chr3 125916300 187745727 61829428 * 0.13607441 BCL6
## 550 chr3 126287883 187745727 61457845 * 0.13466694 BCL6
## 551 chr3 127074966 187745727 60670762 * 0.17676638 BCL6
## 552 chr3 127079317 187745727 60666411 * 0.11544891 BCL6
## 553 chr3 127598246 187745727 60147482 * 0.12647550 BCL6
## 554 chr3 127729636 187745727 60016092 * 0.09028233 BCL6
## 555 chr3 127733217 187745727 60012511 * 0.06787551 BCL6
## 556 chr3 127736269 187745727 60009459 * 0.14203458 BCL6
## 557 chr3 127751371 187745727 59994357 * 0.06287681 BCL6
## 558 chr3 127754726 187745727 59991002 * 0.14416674 BCL6
## 559 chr3 127762073 187745727 59983655 * 0.11215562 BCL6
## 560 chr3 127835686 187745727 59910042 * 0.23218476 BCL6
## 561 chr3 127842019 187745727 59903709 * 0.12687482 BCL6
## 562 chr3 127843888 187745727 59901840 * 0.21138805 BCL6
## 563 chr3 128048773 187745727 59696955 * 0.06326044 BCL6
## 564 chr3 128095569 187745727 59650159 * 0.13545757 BCL6
## 565 chr3 128114457 187745727 59631271 * 0.11589238 BCL6
## 566 chr3 128115429 187745727 59630299 * 0.05276134 BCL6
## 567 chr3 128675071 187745727 59070657 * 0.10191590 BCL6
## 568 chr3 129121307 187745727 58624421 * 0.14883740 BCL6
## 569 chr3 129123654 187745727 58622074 * 0.12408634 BCL6
## 570 chr3 129161442 187745727 58584286 * 0.11305411 BCL6
## 571 chr3 129276451 187745727 58469277 * 0.15586654 BCL6
## 572 chr3 129278799 187745727 58466929 * 0.18242964 BCL6
## 573 chr3 129282463 187745727 58463265 * 0.17067655 BCL6
## 574 chr3 129315299 187745727 58430429 * 0.14350127 BCL6
## 575 chr3 129409539 187745727 58336189 * 0.11304404 BCL6
## 576 chr3 129425415 187745727 58320313 * 0.07213473 BCL6
## 577 chr3 129428770 187745727 58316958 * 0.12511896 BCL6
## 578 chr3 129435084 187745727 58310644 * 0.10260289 BCL6
## 579 chr3 129436575 187745727 58309153 * 0.10933966 BCL6
## 580 chr3 129439968 187745727 58305760 * 0.12612500 BCL6
## 581 chr3 129577403 187745727 58168325 * 0.17502617 BCL6
## 582 chr3 129583245 187745727 58162483 * 0.17356617 BCL6
## 583 chr3 129657306 187745727 58088422 * 0.09369370 BCL6
## 584 chr3 129672467 187745727 58073261 * 0.07915156 BCL6
## 585 chr3 129673964 187745727 58071764 * 0.15682458 BCL6
## 586 chr3 129679414 187745727 58066314 * 0.10560477 BCL6
## 587 chr3 129767986 187745727 57977742 * 0.08787954 BCL6
## 588 chr3 129824547 187745727 57921181 * 0.13829234 BCL6
## 589 chr3 129827912 187745727 57917816 * 0.09677173 BCL6
## 590 chr3 130111724 187745727 57634004 * 0.14085895 BCL6
## 591 chr3 130901031 187745727 56844697 * 0.07188328 BCL6
## 592 chr3 132317241 187745727 55428487 * 0.11887347 BCL6
## 593 chr3 132406884 187745727 55338844 * 0.09067504 BCL6
## 594 chr3 132564277 187745727 55181451 * 0.07252577 BCL6
## 595 chr3 132595836 187745727 55149892 * 0.12404733 BCL6
## 596 chr3 132597113 187745727 55148615 * 0.08835699 BCL6
## 597 chr3 132625429 187745727 55120299 * 0.11655040 BCL6
## 598 chr3 133445306 187745727 54300422 * 0.11348998 BCL6
## 599 chr3 133448347 187745727 54297381 * 0.19382122 BCL6
## 600 chr3 133466723 187745727 54279005 * 0.19602516 BCL6
## 601 chr3 133468039 187745727 54277689 * 0.13862072 BCL6
## 602 chr3 133475360 187745727 54270368 * 0.16019501 BCL6
## 603 chr3 133477407 187745727 54268321 * 0.19449364 BCL6
## 604 chr3 133480503 187745727 54265225 * 0.14676163 BCL6
## 605 chr3 133484205 187745727 54261523 * 0.14195150 BCL6
## 606 chr3 133489147 187745727 54256581 * 0.05690259 BCL6
## 607 chr3 133491450 187745727 54254278 * 0.18956796 BCL6
## 608 chr3 133525691 187745727 54220037 * 0.08067024 BCL6
## 609 chr3 133573437 187745727 54172291 * 0.15826574 BCL6
## 610 chr3 135444155 187745727 52301573 * 0.10604044 BCL6
## 611 chr3 136194551 187745727 51551177 * 0.06929483 BCL6
## 612 chr3 136250690 187745727 51495038 * 0.13250480 BCL6
## 613 chr3 136862109 187745727 50883619 * 0.13804785 BCL6
## 614 chr3 136896992 187745727 50848736 * 0.11344189 BCL6
## 615 chr3 136925719 187745727 50820009 * 0.09640403 BCL6
## 616 chr3 136947650 187745727 50798078 * 0.05043151 BCL6
## 617 chr3 136949945 187745727 50795783 * 0.14644522 BCL6
## 618 chr3 138060890 187745727 49684838 * 0.06208463 BCL6
## 619 chr3 138237121 187745727 49508607 * 0.05008555 BCL6
## 620 chr3 138367895 187745727 49377833 * 0.09764907 BCL6
## 621 chr3 138371376 187745727 49374352 * 0.12967132 BCL6
## 622 chr3 139935302 187745727 47810426 * 0.12958071 BCL6
## 623 chr3 140540318 187745727 47205410 * 0.15580559 BCL6
## 624 chr3 140942116 187745727 46803612 * 0.13810208 BCL6
## 625 chr3 141337461 187745727 46408267 * 0.14831909 BCL6
## 626 chr3 141370232 187745727 46375496 * 0.12005535 BCL6
## 627 chr3 141379627 187745727 46366101 * 0.18806353 BCL6
## 628 chr3 141381157 187745727 46364571 * 0.09127162 BCL6
## 629 chr3 141383866 187745727 46361862 * 0.08900497 BCL6
## 630 chr3 141386165 187745727 46359563 * 0.12023488 BCL6
## 631 chr3 141387315 187745727 46358413 * 0.16270917 BCL6
## 632 chr3 141388749 187745727 46356979 * 0.11218575 BCL6
## 633 chr3 141400563 187745727 46345165 * 0.08312894 BCL6
## 634 chr3 141441458 187745727 46304270 * 0.13405665 BCL6
## 635 chr3 141679131 187745727 46066597 * 0.13988314 BCL6
## 636 chr3 141990472 187745727 45755256 * 0.06648156 BCL6
## 637 chr3 141991520 187745727 45754208 * 0.08910669 BCL6
## 638 chr3 143082508 187745727 44663220 * 0.12426679 BCL6
## 639 chr3 143085065 187745727 44660663 * 0.11875873 BCL6
## 640 chr3 143207347 187745727 44538381 * 0.10978209 BCL6
## 641 chr3 143294432 187745727 44451296 * 0.10794967 BCL6
## 642 chr3 143565805 187745727 44179923 * 0.09758213 BCL6
## 643 chr3 143884300 187745727 43861428 * 0.08793278 BCL6
## 644 chr3 143972044 187745727 43773684 * 0.13467341 BCL6
## 645 chr3 144483045 187745727 43262683 * 0.09860902 BCL6
## 646 chr3 149089560 187745727 38656168 * 0.05913680 BCL6
## 647 chr3 149090966 187745727 38654762 * 0.09395607 BCL6
## 648 chr3 149145825 187745727 38599903 * 0.11145180 BCL6
## 649 chr3 149245732 187745727 38499996 * 0.08419503 BCL6
## 650 chr3 150023278 187745727 37722450 * 0.16987436 BCL6
## 651 chr3 150409013 187745727 37336715 * 0.14529599 BCL6
## 652 chr3 150599038 187745727 37146690 * 0.13190881 BCL6
## 653 chr3 150607401 187745727 37138327 * 0.06490779 BCL6
## 654 chr3 150741100 187745727 37004628 * 0.10631845 BCL6
## 655 chr3 150747394 187745727 36998334 * 0.06916607 BCL6
## 656 chr3 150760643 187745727 36985085 * 0.14400821 BCL6
## 657 chr3 150763411 187745727 36982317 * 0.13858571 BCL6
## 658 chr3 150766329 187745727 36979399 * 0.23396418 BCL6
## 659 chr3 151086168 187745727 36659560 * 0.21271563 BCL6
## 660 chr3 151377897 187745727 36367831 * 0.08836069 BCL6
## 661 chr3 151379544 187745727 36366184 * 0.09564633 BCL6
## 662 chr3 151382834 187745727 36362894 * 0.14512711 BCL6
## 663 chr3 151383991 187745727 36361737 * 0.08934728 BCL6
## 664 chr3 151384860 187745727 36360868 * 0.11054070 BCL6
## 665 chr3 151387745 187745727 36357983 * 0.15448245 BCL6
## 666 chr3 151391317 187745727 36354411 * 0.06658623 BCL6
## 667 chr3 151393215 187745727 36352513 * 0.08315995 BCL6
## 668 chr3 151396776 187745727 36348952 * 0.09286569 BCL6
## 669 chr3 151397396 187745727 36348332 * 0.07722140 BCL6
## 670 chr3 151398935 187745727 36346793 * 0.10583185 BCL6
## 671 chr3 151403596 187745727 36342132 * 0.05957182 BCL6
## 672 chr3 151411072 187745727 36334656 * 0.23658804 BCL6
## 673 chr3 151413131 187745727 36332597 * 0.07807154 BCL6
## 674 chr3 151422041 187745727 36323687 * 0.07119711 BCL6
## 675 chr3 151426084 187745727 36319644 * 0.10876142 BCL6
## 676 chr3 151432022 187745727 36313706 * 0.09380929 BCL6
## 677 chr3 151434238 187745727 36311490 * 0.12613244 BCL6
## 678 chr3 152198102 187745727 35547626 * 0.06894782 BCL6
## 679 chr3 152199576 187745727 35546152 * 0.08660654 BCL6
## 680 chr3 152201018 187745727 35544710 * 0.07719514 BCL6
## 681 chr3 152254065 187745727 35491663 * 0.14431373 BCL6
## 682 chr3 152269378 187745727 35476350 * 0.13139687 BCL6
## 683 chr3 152291357 187745727 35454371 * 0.09736282 BCL6
## 684 chr3 152302660 187745727 35443068 * 0.09100990 BCL6
## 685 chr3 152376823 187745727 35368905 * 0.09735926 BCL6
## 686 chr3 152394297 187745727 35351431 * 0.09001667 BCL6
## 687 chr3 152446994 187745727 35298734 * 0.09051473 BCL6
## 688 chr3 152512071 187745727 35233657 * 0.10979078 BCL6
## 689 chr3 152512754 187745727 35232974 * 0.09589997 BCL6
## 690 chr3 152513485 187745727 35232243 * 0.08542636 BCL6
## 691 chr3 152514288 187745727 35231440 * 0.07887901 BCL6
## 692 chr3 152516288 187745727 35229440 * 0.15182362 BCL6
## 693 chr3 152520426 187745727 35225302 * 0.07755214 BCL6
## 694 chr3 154469690 187745727 33276038 * 0.07831283 BCL6
## 695 chr3 154684095 187745727 33061633 * 0.08061593 BCL6
## 696 chr3 154761061 187745727 32984667 * 0.05670366 BCL6
## 697 chr3 154764142 187745727 32981586 * 0.11849371 BCL6
## 698 chr3 154764880 187745727 32980848 * 0.07989356 BCL6
## 699 chr3 154765805 187745727 32979923 * 0.12083480 BCL6
## 700 chr3 154766821 187745727 32978907 * 0.17141296 BCL6
## 701 chr3 154862474 187745727 32883254 * 0.17683833 BCL6
## 702 chr3 154863496 187745727 32882232 * 0.06186980 BCL6
## 703 chr3 154904195 187745727 32841533 * 0.13517235 BCL6
## 704 chr3 155079546 187745727 32666182 * 0.20229559 BCL6
## 705 chr3 155100644 187745727 32645084 * 0.05516995 BCL6
## 706 chr3 155110097 187745727 32635631 * 0.12564045 BCL6
## 707 chr3 155111595 187745727 32634133 * 0.26333100 BCL6
## 708 chr3 155113079 187745727 32632649 * 0.18518298 BCL6
## 709 chr3 155114313 187745727 32631415 * 0.09750990 BCL6
## 710 chr3 155190948 187745727 32554780 * 0.07972189 BCL6
## 711 chr3 155210666 187745727 32535062 * 0.07553783 BCL6
## 712 chr3 155244557 187745727 32501171 * 0.18147452 BCL6
## 713 chr3 155252044 187745727 32493684 * 0.10734271 BCL6
## 714 chr3 155372653 187745727 32373075 * 0.14427449 BCL6
## 715 chr3 155373497 187745727 32372231 * 0.05158007 BCL6
## 716 chr3 155873028 187745727 31872700 * 0.06082782 BCL6
## 717 chr3 156797381 187745727 30948347 * 0.08400407 BCL6
## 718 chr3 156820629 187745727 30925099 * 0.12989957 BCL6
## 719 chr3 157089231 187745727 30656497 * 0.12785057 BCL6
## 720 chr3 157103430 187745727 30642298 * 0.12687911 BCL6
## 721 chr3 157105322 187745727 30640406 * 0.12659515 BCL6
## 722 chr3 157167164 187745727 30578564 * 0.19003372 BCL6
## 723 chr3 157170966 187745727 30574762 * 0.07883429 BCL6
## 724 chr3 158107765 187745727 29637963 * 0.08736654 BCL6
## 725 chr3 158672388 187745727 29073340 * 0.11066068 BCL6
## 726 chr3 160136223 187745727 27609505 * 0.16986475 BCL6
## 727 chr3 160139432 187745727 27606296 * 0.05967330 BCL6
## 728 chr3 160401494 187745727 27344234 * 0.05679908 BCL6
## 729 chr3 160449639 187745727 27296089 * 0.14918169 BCL6
## 730 chr3 161015758 187745727 26729970 * 0.21225641 BCL6
## 731 chr3 161035547 187745727 26710181 * 0.13571595 BCL6
## 732 chr3 161042291 187745727 26703437 * 0.09673875 BCL6
## 733 chr3 161043635 187745727 26702093 * 0.18729752 BCL6
## 734 chr3 161047102 187745727 26698626 * 0.05405621 BCL6
## 735 chr3 161051104 187745727 26694624 * 0.06959249 BCL6
## 736 chr3 161067190 187745727 26678538 * 0.07049633 BCL6
## 737 chr3 161069762 187745727 26675966 * 0.13547343 BCL6
## 738 chr3 161105266 187745727 26640462 * 0.13684484 BCL6
## 739 chr3 167734965 187745727 20010763 * 0.14316871 BCL6
## 740 chr3 167773954 187745727 19971774 * 0.13070098 BCL6
## 741 chr3 167775407 187745727 19970321 * 0.10417872 BCL6
## 742 chr3 167798537 187745727 19947191 * 0.10235548 BCL6
## 743 chr3 168095549 187745727 19650179 * 0.13628016 BCL6
## 744 chr3 169662135 187745727 18083593 * 0.12611038 BCL6
## 745 chr3 169769523 187745727 17976205 * 0.13573153 BCL6
## 746 chr3 169772697 187745727 17973031 * 0.17097475 BCL6
## 747 chr3 169813048 187745727 17932680 * 0.13135216 BCL6
## 748 chr3 169841283 187745727 17904445 * 0.08608561 BCL6
## 749 chr3 169846628 187745727 17899100 * 0.14041373 BCL6
## 750 chr3 169932062 187745727 17813666 * 0.12990010 BCL6
## 751 chr3 169940267 187745727 17805461 * 0.13730067 BCL6
## 752 chr3 169978463 187745727 17767265 * 0.14612396 BCL6
## 753 chr3 170038274 187745727 17707454 * 0.18462685 BCL6
## 754 chr3 170054347 187745727 17691381 * 0.07469574 BCL6
## 755 chr3 170055547 187745727 17690181 * 0.12466672 BCL6
## 756 chr3 170056903 187745727 17688825 * 0.15977961 BCL6
## 757 chr3 170058282 187745727 17687446 * 0.08467299 BCL6
## 758 chr3 170059031 187745727 17686697 * 0.07471118 BCL6
## 759 chr3 170076324 187745727 17669404 * 0.22019400 BCL6
## 760 chr3 170083434 187745727 17662294 * 0.10739689 BCL6
## 761 chr3 170128829 187745727 17616899 * 0.13440576 BCL6
## 762 chr3 170296879 187745727 17448849 * 0.08831080 BCL6
## 763 chr3 170357239 187745727 17388489 * 0.13758256 BCL6
## 764 chr3 170632832 187745727 17112896 * 0.16792043 BCL6
## 765 chr3 170634714 187745727 17111014 * 0.17334736 BCL6
## 766 chr3 170908342 187745727 16837386 * 0.14310824 BCL6
## 767 chr3 177037017 187745727 10708711 * 0.13663762 BCL6
## 768 chr3 177060691 187745727 10685037 * 0.09640477 BCL6
## 769 chr3 177090254 187745727 10655474 * 0.12763300 BCL6
## 770 chr3 177251826 187745727 10493902 * 0.08577292 BCL6
## 771 chr3 177318377 187745727 10427351 * 0.13394376 BCL6
## 772 chr3 177319648 187745727 10426080 * 0.06956526 BCL6
## 773 chr3 177320817 187745727 10424911 * 0.09470720 BCL6
## 774 chr3 177343893 187745727 10401835 * 0.06311502 BCL6
## 775 chr3 177345554 187745727 10400174 * 0.09666606 BCL6
## 776 chr3 177350675 187745727 10395053 * 0.10540809 BCL6
## 777 chr3 177351890 187745727 10393838 * 0.15327775 BCL6
## 778 chr3 177359296 187745727 10386432 * 0.15555380 BCL6
## 779 chr3 178966954 187745727 8778774 * 0.11532145 BCL6
## 780 chr3 179148391 187745727 8597337 * 0.10646238 BCL6
## 781 chr3 179266401 187745727 8479327 * 0.16471620 BCL6
## 782 chr3 179347529 187745727 8398199 * 0.12058123 BCL6
## 783 chr3 179563026 187745727 8182702 * 0.13864582 BCL6
## 784 chr3 179880797 187745727 7864931 * 0.05165673 BCL6
## 785 chr3 179898130 187745727 7847598 * 0.08082829 BCL6
## 786 chr3 179956485 187745727 7789243 * 0.10294154 BCL6
## 787 chr3 179961589 187745727 7784139 * 0.08978143 BCL6
## 788 chr3 180679674 187745727 7066054 * 0.13137735 BCL6
## 789 chr3 181702098 187745727 6043630 * 0.08871721 BCL6
## 790 chr3 181711567 187745727 6034161 * 0.12617798 BCL6
## 791 chr3 181906725 187745727 5839003 * 0.12713558 BCL6
## 792 chr3 181985544 187745727 5760184 * 0.15154163 BCL6
## 793 chr3 182325467 187745727 5420261 * 0.13782265 BCL6
## 794 chr3 182349528 187745727 5396200 * 0.10838355 BCL6
## 795 chr3 182413517 187745727 5332211 * 0.11989333 BCL6
## 796 chr3 182967349 187745727 4778379 * 0.11366495 BCL6
## 797 chr3 183045102 187745727 4700626 * 0.17923693 BCL6
## 798 chr3 183116173 187745727 4629555 * 0.18368313 BCL6
## 799 chr3 183260204 187745727 4485524 * 0.11970126 BCL6
## 800 chr3 183484690 187745727 4261038 * 0.09214132 BCL6
## 801 chr3 183485416 187745727 4260312 * 0.08530081 BCL6
## 802 chr3 183536322 187745727 4209406 * 0.13090446 BCL6
## 803 chr3 183543255 187745727 4202473 * 0.05844663 BCL6
## 804 chr3 183552444 187745727 4193284 * 0.20113237 BCL6
## 805 chr3 183553688 187745727 4192040 * 0.11979983 BCL6
## 806 chr3 183554517 187745727 4191211 * 0.09765674 BCL6
## 807 chr3 183564455 187745727 4181273 * 0.13996543 BCL6
## 808 chr3 183569570 187745727 4176158 * 0.13001854 BCL6
## 809 chr3 183570584 187745727 4175144 * 0.14533889 BCL6
## 810 chr3 183573042 187745727 4172686 * 0.19175941 BCL6
## 811 chr3 183576610 187745727 4169118 * 0.10911852 BCL6
## 812 chr3 183578712 187745727 4167016 * 0.18662862 BCL6
## 813 chr3 183580142 187745727 4165586 * 0.16606740 BCL6
## 814 chr3 183585714 187745727 4160014 * 0.16971369 BCL6
## 815 chr3 183586580 187745727 4159148 * 0.10939888 BCL6
## 816 chr3 183587452 187745727 4158276 * 0.12883036 BCL6
## 817 chr3 183592144 187745727 4153584 * 0.25284019 BCL6
## 818 chr3 183636149 187745727 4109579 * 0.15521279 BCL6
## 819 chr3 183698197 187745727 4047531 * 0.12685713 BCL6
## 820 chr3 183937718 187745727 3808010 * 0.10361218 BCL6
## 821 chr3 184561692 187745727 3184036 * 0.15287869 BCL6
## 822 chr3 184664402 187745727 3081326 * 0.11859538 BCL6
## 823 chr3 184756113 187745727 2989615 * 0.25171596 BCL6
## 824 chr3 185057080 187745727 2688648 * 0.06273122 BCL6
## 825 chr3 185060661 187745727 2685067 * 0.06371340 BCL6
## 826 chr3 185063284 187745727 2682444 * 0.14978655 BCL6
## 827 chr3 185065146 187745727 2680582 * 0.08962650 BCL6
## 828 chr3 185080568 187745727 2665160 * 0.07878633 BCL6
## 829 chr3 185280784 187745727 2464944 * 0.09645846 BCL6
## 830 chr3 185354198 187745727 2391530 * 0.14814700 BCL6
## 831 chr3 185740707 187745727 2005021 * 0.08392915 BCL6
## 832 chr3 186108620 187745727 1637108 * 0.15941438 BCL6
## 833 chr3 186225746 187745727 1519982 * 0.07805396 BCL6
## 834 chr3 186226412 187745727 1519316 * 0.07561309 BCL6
## 835 chr3 186227864 187745727 1517864 * 0.11153938 BCL6
## 836 chr3 186235493 187745727 1510235 * 0.12730966 BCL6
## 837 chr3 186242272 187745727 1503456 * 0.13647801 BCL6
## 838 chr3 186255338 187745727 1490390 * 0.10715818 BCL6
## 839 chr3 186331065 187745727 1414663 * 0.15081316 BCL6
## 840 chr3 186332929 187745727 1412799 * 0.05966958 BCL6
## 841 chr3 186339352 187745727 1406376 * 0.15301620 BCL6
## 842 chr3 186514448 187745727 1231280 * 0.06801978 BCL6
## 843 chr3 186526038 187745727 1219690 * 0.12957174 BCL6
## 844 chr3 186992236 187745727 753492 * 0.06851255 BCL6
## 845 chr3 186993138 187745727 752590 * 0.12089283 BCL6
## 846 chr3 186996371 187745727 749357 * 0.10694187 BCL6
## 847 chr3 187013553 187745727 732175 * 0.13981329 BCL6
## 848 chr3 187016379 187745727 729349 * 0.19395035 BCL6
## 849 chr3 187017600 187745727 728128 * 0.09104658 BCL6
## 850 chr3 187024145 187745727 721583 * 0.11981944 BCL6
## 851 chr3 187026185 187745727 719543 * 0.08021730 BCL6
## 852 chr3 187031296 187745727 714432 * 0.11525481 BCL6
## 853 chr3 187065056 187745727 680672 * 0.15865652 BCL6
## 854 chr3 187066591 187745727 679137 * 0.10792867 BCL6
## 855 chr3 187139371 187745727 606357 * 0.12998099 BCL6
## 856 chr3 187719020 187745727 26708 * 0.08688355 BCL6
## 857 chr3 187720087 187745727 25641 * 0.17755432 BCL6
## 858 chr3 187743824 187745727 1904 * 0.13790003 BCL6
## 859 chr3 187745727 187746896 1170 * 0.08981186 BCL6
## 860 chr3 187745727 187748172 2446 * 0.08902227 BCL6
## 861 chr3 187745727 187750294 4568 * 0.12911410 BCL6
## 862 chr3 187745727 187828941 83215 * 0.11245099 BCL6
## 863 chr3 187745727 187898708 152982 * 0.10911186 BCL6
## 864 chr3 187745727 187899368 153642 * 0.11284395 BCL6
## 865 chr3 187745727 187901637 155911 * 0.29242384 BCL6
## 866 chr3 187745727 187917443 171717 * 0.12053230 BCL6
## 867 chr3 187745727 187918316 172590 * 0.08402598 BCL6
## 868 chr3 187745727 187919316 173590 * 0.13574034 BCL6
## 869 chr3 187745727 187923186 177460 * 0.09920838 BCL6
## 870 chr3 187745727 187926668 180942 * 0.13939333 BCL6
## 871 chr3 187745727 187929646 183920 * 0.07850029 BCL6
## 872 chr3 187745727 187932714 186988 * 0.19772491 BCL6
## 873 chr3 187745727 187935853 190127 * 0.15852449 BCL6
## 874 chr3 187745727 187940132 194406 * 0.18596480 BCL6
## 875 chr3 187745727 187942823 197097 * 0.14105131 BCL6
## 876 chr3 187745727 187945060 199334 * 0.22414850 BCL6
## 877 chr3 187745727 187946204 200478 * 0.16596058 BCL6
## 878 chr3 187745727 187946929 201203 * 0.19650455 BCL6
## 879 chr3 187745727 187951914 206188 * 0.11019023 BCL6
## 880 chr3 187745727 187958424 212698 * 0.21842410 BCL6
## 881 chr3 187745727 187963381 217655 * 0.16848494 BCL6
## 882 chr3 187745727 187967475 221749 * 0.22232725 BCL6
## 883 chr3 187745727 187969558 223832 * 0.22200808 BCL6
## 884 chr3 187745727 187974123 228397 * 0.10668933 BCL6
## 885 chr3 187745727 187974891 229165 * 0.12929316 BCL6
## 886 chr3 187745727 187976154 230428 * 0.22839608 BCL6
## 887 chr3 187745727 187978723 232997 * 0.19906662 BCL6
## 888 chr3 187745727 187979621 233895 * 0.17159248 BCL6
## 889 chr3 187745727 187982224 236498 * 0.15487181 BCL6
## 890 chr3 187745727 188000218 254492 * 0.11656882 BCL6
## 891 chr3 187745727 188006805 261079 * 0.10397418 BCL6
## 892 chr3 187745727 188061213 315487 * 0.11113390 BCL6
## 893 chr3 187745727 188085235 339509 * 0.22646446 BCL6
## 894 chr3 187745727 188086340 340614 * 0.17261865 BCL6
## 895 chr3 187745727 188087787 342061 * 0.26189464 BCL6
## 896 chr3 187745727 188092830 347104 * 0.22635719 BCL6
## 897 chr3 187745727 188097847 352121 * 0.12423490 BCL6
## 898 chr3 187745727 188104650 358924 * 0.06941051 BCL6
## 899 chr3 187745727 188109014 363288 * 0.12636815 BCL6
## 900 chr3 187745727 188174634 428908 * 0.10051307 BCL6
## 901 chr3 187745727 188175787 430061 * 0.07912004 BCL6
## 902 chr3 187745727 188179551 433825 * 0.09840782 BCL6
## 903 chr3 187745727 188214234 468508 * 0.12410285 BCL6
## 904 chr3 187745727 188236550 490824 * 0.20956652 BCL6
## 905 chr3 187745727 188239250 493524 * 0.19891993 BCL6
## 906 chr3 187745727 188242493 496767 * 0.17158017 BCL6
## 907 chr3 187745727 188244501 498775 * 0.09839119 BCL6
## 908 chr3 187745727 188294150 548424 * 0.10525955 BCL6
## 909 chr3 187745727 188303792 558066 * 0.12809266 BCL6
## 910 chr3 187745727 188306840 561114 * 0.14932455 BCL6
## 911 chr3 187745727 188312140 566414 * 0.07292628 BCL6
## 912 chr3 187745727 188581917 836191 * 0.12239403 BCL6
## 913 chr3 187745727 188693405 947679 * 0.15842885 BCL6
## 914 chr3 187745727 188697222 951496 * 0.21789027 BCL6
## 915 chr3 187745727 188699364 953638 * 0.08294289 BCL6
## 916 chr3 187745727 188700935 955209 * 0.09863136 BCL6
## 917 chr3 187745727 188701743 956017 * 0.07847569 BCL6
## 918 chr3 187745727 188727127 981401 * 0.10612608 BCL6
## 919 chr3 187745727 188729229 983503 * 0.10617050 BCL6
## 920 chr3 187745727 188747745 1002019 * 0.06050713 BCL6
## 921 chr3 187745727 188753550 1007824 * 0.23575002 BCL6
## 922 chr3 187745727 188756354 1010628 * 0.13581243 BCL6
## 923 chr3 187745727 189288933 1543207 * 0.11762768 BCL6
## 924 chr3 187745727 189324811 1579085 * 0.11608705 BCL6
## 925 chr3 187745727 189509916 1764190 * 0.10563703 BCL6
## 926 chr3 187745727 189512184 1766458 * 0.14297100 BCL6
## 927 chr3 187745727 191105462 3359736 * 0.11599051 BCL6
## 928 chr3 187745727 192042179 4296453 * 0.14312737 BCL6
## 929 chr3 187745727 192131993 4386267 * 0.08633528 BCL6
## 930 chr3 187745727 192183135 4437409 * 0.13753979 BCL6
## 931 chr3 187745727 192183978 4438252 * 0.07044768 BCL6
## 932 chr3 187745727 194074764 6329038 * 0.08293826 BCL6
## 933 chr3 187745727 194101256 6355530 * 0.11896451 BCL6
## 934 chr3 187745727 194104123 6358397 * 0.19293560 BCL6
## 935 chr3 187745727 194107283 6361557 * 0.09141489 BCL6
## 936 chr3 187745727 194109411 6363685 * 0.13459367 BCL6
## 937 chr3 187745727 194487063 6741337 * 0.14187218 BCL6
## 938 chr3 187745727 194687650 6941924 * 0.15876923 BCL6
## 939 chr3 187745727 194691133 6945407 * 0.06564638 BCL6
## 940 chr3 187745727 194691890 6946164 * 0.13244419 BCL6
## 941 chr3 187745727 194730579 6984853 * 0.07642313 BCL6
## 942 chr3 187745727 194736917 6991191 * 0.15275542 BCL6
## 943 chr3 187745727 195271104 7525378 * 0.15427197 BCL6
## 944 chr3 187745727 195282172 7536446 * 0.09065061 BCL6
## 945 chr3 187745727 195394088 7648362 * 0.21079318 BCL6
## 946 chr3 187745727 195395487 7649761 * 0.10800784 BCL6
## 947 chr3 187745727 195397168 7651442 * 0.08242882 BCL6
## 948 chr3 187745727 195442558 7696832 * 0.15591488 BCL6
## 949 chr3 187745727 195543017 7797291 * 0.11524679 BCL6
## 950 chr3 187745727 195838919 8093193 * 0.11040730 BCL6
## 951 chr3 187745727 195895563 8149837 * 0.13850952 BCL6
## 952 chr3 187745727 195908210 8162484 * 0.17339914 BCL6
## 953 chr3 187745727 196071109 8325383 * 0.12141896 BCL6
## 954 chr3 187745727 196081831 8336105 * 0.12867293 BCL6
## 955 chr3 187745727 196115369 8369643 * 0.17845004 BCL6
## 956 chr3 187745727 196118000 8372274 * 0.07629602 BCL6
## 957 chr3 187745727 196118583 8372857 * 0.06530707 BCL6
## 958 chr3 187745727 196179833 8434107 * 0.12042985 BCL6
## 959 chr3 187745727 196351466 8605740 * 0.10914051 BCL6
## 960 chr3 187745727 196503055 8757329 * 0.12694587 BCL6
## 961 chr3 187745727 196697412 8951686 * 0.09261805 BCL6
## 962 chr3 187745727 196740304 8994578 * 0.11200674 BCL6
## 963 chr3 187745727 196931969 9186243 * 0.15650327 BCL6
## 964 chr3 187745727 196962682 9216956 * 0.11227033 BCL6
## 965 chr3 187745727 197139910 9394184 * 0.09430198 BCL6
## 966 chr3 187745727 197175298 9429572 * 0.11652491 BCL6
## 967 chr3 187745727 197181959 9436233 * 0.10331658 BCL6
## 968 chr3 187745727 197298187 9552461 * 0.13838629 BCL6
## 969 chr3 187745727 197501875 9756149 * 0.15387231 BCL6
## 970 chr3 187745727 197782448 10036722 * 0.09443801 BCL6
## 971 chr3 187745727 197784412 10038686 * 0.13473861 BCL6
## 972 chr3 187745727 197785297 10039571 * 0.11341010 BCL6
## 973 chr3 187745727 197791151 10045425 * 0.17174252 BCL6
## 974 chr3 187745727 197834851 10089125 * 0.10258185 BCL6
## 975 chr3 187745727 197938346 10192620 * 0.08773546 BCL6
## 976 chr6 229261 106086320 105857060 * 0.08508266 PRDM1
## 977 chr6 257812 106086320 105828509 * 0.09132975 PRDM1
## 978 chr6 259986 106086320 105826335 * 0.06110767 PRDM1
## 979 chr6 296582 106086320 105789739 * 0.05917905 PRDM1
## 980 chr6 305703 106086320 105780618 * 0.14023536 PRDM1
## 981 chr6 316602 106086320 105769719 * 0.09962038 PRDM1
## 982 chr6 319839 106086320 105766482 * 0.12494468 PRDM1
## 983 chr6 323006 106086320 105763315 * 0.18431572 PRDM1
## 984 chr6 328276 106086320 105758045 * 0.19321306 PRDM1
## 985 chr6 330506 106086320 105755815 * 0.10715098 PRDM1
## 986 chr6 331978 106086320 105754343 * 0.09721113 PRDM1
## 987 chr6 342143 106086320 105744178 * 0.07376391 PRDM1
## 988 chr6 355963 106086320 105730358 * 0.07438853 PRDM1
## 989 chr6 364842 106086320 105721479 * 0.07771737 PRDM1
## 990 chr6 411609 106086320 105674712 * 0.05465197 PRDM1
## 991 chr6 722763 106086320 105363558 * 0.05976315 PRDM1
## 992 chr6 1797398 106086320 104288923 * 0.12588725 PRDM1
## 993 chr6 1821918 106086320 104264403 * 0.11332755 PRDM1
## 994 chr6 1942953 106086320 104143368 * 0.06640095 PRDM1
## 995 chr6 2231077 106086320 103855244 * 0.07624934 PRDM1
## 996 chr6 2542972 106086320 103543349 * 0.06015581 PRDM1
## 997 chr6 2563803 106086320 103522518 * 0.05001312 PRDM1
## 998 chr6 2641177 106086320 103445144 * 0.07782677 PRDM1
## 999 chr6 2706642 106086320 103379679 * 0.05440018 PRDM1
## 1000 chr6 4879735 106086320 101206586 * 0.11378431 PRDM1
## 1001 chr6 5072396 106086320 101013925 * 0.06777532 PRDM1
## 1002 chr6 5869642 106086320 100216679 * 0.10860335 PRDM1
## 1003 chr6 6407201 106086320 99679120 * -0.05046205 PRDM1
## 1004 chr6 6918629 106086320 99167692 * 0.05130585 PRDM1
## 1005 chr6 7156397 106086320 98929924 * 0.06168730 PRDM1
## 1006 chr6 7689731 106086320 98396590 * 0.06608274 PRDM1
## 1007 chr6 7721862 106086320 98364459 * 0.08155212 PRDM1
## 1008 chr6 7878665 106086320 98207656 * 0.05940658 PRDM1
## 1009 chr6 7880057 106086320 98206264 * 0.05063599 PRDM1
## 1010 chr6 7897874 106086320 98188447 * 0.10545746 PRDM1
## 1011 chr6 7960939 106086320 98125382 * 0.07130983 PRDM1
## 1012 chr6 7963272 106086320 98123049 * 0.07217222 PRDM1
## 1013 chr6 8065711 106086320 98020610 * 0.05181622 PRDM1
## 1014 chr6 8110444 106086320 97975877 * 0.06971337 PRDM1
## 1015 chr6 8337212 106086320 97749109 * 0.05762043 PRDM1
## 1016 chr6 10626496 106086320 95459825 * 0.06685224 PRDM1
## 1017 chr6 10714187 106086320 95372134 * 0.07632958 PRDM1
## 1018 chr6 11199013 106086320 94887308 * 0.08542939 PRDM1
## 1019 chr6 11386478 106086320 94699843 * 0.07378480 PRDM1
## 1020 chr6 11412676 106086320 94673645 * 0.05865563 PRDM1
## 1021 chr6 11735067 106086320 94351254 * 0.06295056 PRDM1
## 1022 chr6 11834180 106086320 94252141 * 0.12043854 PRDM1
## 1023 chr6 12320229 106086320 93766092 * 0.06717239 PRDM1
## 1024 chr6 13655858 106086320 92430463 * 0.09221429 PRDM1
## 1025 chr6 14382460 106086320 91703861 * 0.09692769 PRDM1
## 1026 chr6 14473143 106086320 91613178 * 0.10419578 PRDM1
## 1027 chr6 15255672 106086320 90830649 * 0.06993382 PRDM1
## 1028 chr6 16473347 106086320 89612974 * 0.05841831 PRDM1
## 1029 chr6 16483714 106086320 89602607 * 0.09714772 PRDM1
## 1030 chr6 16504296 106086320 89582025 * 0.06263718 PRDM1
## 1031 chr6 16508758 106086320 89577563 * 0.08672041 PRDM1
## 1032 chr6 16512127 106086320 89574194 * 0.06608208 PRDM1
## 1033 chr6 16521743 106086320 89564578 * 0.07964187 PRDM1
## 1034 chr6 16541128 106086320 89545193 * 0.07113783 PRDM1
## 1035 chr6 16836564 106086320 89249757 * 0.05941219 PRDM1
## 1036 chr6 17664385 106086320 88421936 * 0.07369051 PRDM1
## 1037 chr6 20543249 106086320 85543072 * 0.15689097 PRDM1
## 1038 chr6 21438846 106086320 84647475 * 0.06048684 PRDM1
## 1039 chr6 24483221 106086320 81603100 * 0.09707332 PRDM1
## 1040 chr6 24513710 106086320 81572611 * 0.05031872 PRDM1
## 1041 chr6 25107271 106086320 80979050 * 0.08110174 PRDM1
## 1042 chr6 25131184 106086320 80955137 * 0.11085540 PRDM1
## 1043 chr6 25411682 106086320 80674639 * 0.07577834 PRDM1
## 1044 chr6 25474905 106086320 80611416 * 0.05522472 PRDM1
## 1045 chr6 25852065 106086320 80234256 * 0.05004171 PRDM1
## 1046 chr6 26342019 106086320 79744302 * 0.05057243 PRDM1
## 1047 chr6 26358593 106086320 79727728 * 0.06615855 PRDM1
## 1048 chr6 26360802 106086320 79725519 * 0.19111837 PRDM1
## 1049 chr6 26534971 106086320 79551350 * 0.13922072 PRDM1
## 1050 chr6 27251432 106086320 78834889 * 0.07910004 PRDM1
## 1051 chr6 28218694 106086320 77867627 * 0.05461630 PRDM1
## 1052 chr6 30425496 106086320 75660825 * 0.06523051 PRDM1
## 1053 chr6 30428290 106086320 75658031 * 0.06304172 PRDM1
## 1054 chr6 30743375 106086320 75342946 * 0.05074664 PRDM1
## 1055 chr6 31190545 106086320 74895776 * 0.06282140 PRDM1
## 1056 chr6 31908908 106086320 74177413 * 0.09913169 PRDM1
## 1057 chr6 32273900 106086320 73812421 * 0.05166475 PRDM1
## 1058 chr6 33645721 106086320 72440600 * 0.06304664 PRDM1
## 1059 chr6 34656862 106086320 71429459 * 0.07112043 PRDM1
## 1060 chr6 35036666 106086320 71049655 * 0.06771448 PRDM1
## 1061 chr6 35580901 106086320 70505420 * 0.05190003 PRDM1
## 1062 chr6 35581676 106086320 70504645 * 0.05886689 PRDM1
## 1063 chr6 36169314 106086320 69917007 * 0.09140114 PRDM1
## 1064 chr6 36379953 106086320 69706368 * 0.06835926 PRDM1
## 1065 chr6 36516590 106086320 69569731 * 0.06111530 PRDM1
## 1066 chr6 36667237 106086320 69419084 * 0.06346736 PRDM1
## 1067 chr6 36753139 106086320 69333182 * 0.06285687 PRDM1
## 1068 chr6 36794065 106086320 69292256 * 0.05141589 PRDM1
## 1069 chr6 37102883 106086320 68983438 * 0.06201606 PRDM1
## 1070 chr6 37260203 106086320 68826118 * 0.05015519 PRDM1
## 1071 chr6 37317600 106086320 68768721 * 0.07882126 PRDM1
## 1072 chr6 37497920 106086320 68588401 * 0.09480575 PRDM1
## 1073 chr6 37508045 106086320 68578276 * 0.05944073 PRDM1
## 1074 chr6 38320990 106086320 67765331 * 0.08341463 PRDM1
## 1075 chr6 38806232 106086320 67280089 * 0.06035570 PRDM1
## 1076 chr6 39472497 106086320 66613824 * 0.07329598 PRDM1
## 1077 chr6 39530420 106086320 66555901 * 0.11694340 PRDM1
## 1078 chr6 39565777 106086320 66520544 * 0.08732131 PRDM1
## 1079 chr6 40240966 106086320 65845355 * 0.05634628 PRDM1
## 1080 chr6 41246287 106086320 64840034 * 0.06956331 PRDM1
## 1081 chr6 41256129 106086320 64830192 * 0.18420791 PRDM1
## 1082 chr6 42177005 106086320 63909316 * 0.09352109 PRDM1
## 1083 chr6 42230212 106086320 63856109 * 0.05369103 PRDM1
## 1084 chr6 42238937 106086320 63847384 * 0.12699338 PRDM1
## 1085 chr6 42269701 106086320 63816620 * 0.07229993 PRDM1
## 1086 chr6 42610567 106086320 63475754 * 0.12132506 PRDM1
## 1087 chr6 43702846 106086320 62383475 * 0.06125308 PRDM1
## 1088 chr6 43714651 106086320 62371670 * 0.07306788 PRDM1
## 1089 chr6 44219446 106086320 61866875 * 0.07347096 PRDM1
## 1090 chr6 44415535 106086320 61670786 * 0.10421626 PRDM1
## 1091 chr6 44524951 106086320 61561370 * 0.05610867 PRDM1
## 1092 chr6 44662687 106086320 61423634 * 0.12000510 PRDM1
## 1093 chr6 44977348 106086320 61108973 * 0.07863916 PRDM1
## 1094 chr6 45001849 106086320 61084472 * 0.06731333 PRDM1
## 1095 chr6 45143690 106086320 60942631 * 0.05259060 PRDM1
## 1096 chr6 45156146 106086320 60930175 * 0.06875436 PRDM1
## 1097 chr6 45416286 106086320 60670035 * 0.07358360 PRDM1
## 1098 chr6 45556360 106086320 60529961 * 0.06122324 PRDM1
## 1099 chr6 45558991 106086320 60527330 * 0.06346844 PRDM1
## 1100 chr6 45710234 106086320 60376087 * 0.12729793 PRDM1
## 1101 chr6 45737637 106086320 60348684 * 0.10441622 PRDM1
## 1102 chr6 45809008 106086320 60277313 * 0.06069252 PRDM1
## 1103 chr6 45814090 106086320 60272231 * 0.15946317 PRDM1
## 1104 chr6 45921050 106086320 60165271 * 0.06481808 PRDM1
## 1105 chr6 45966961 106086320 60119360 * 0.05111764 PRDM1
## 1106 chr6 45990337 106086320 60095984 * 0.08058544 PRDM1
## 1107 chr6 46011457 106086320 60074864 * 0.06417029 PRDM1
## 1108 chr6 46015511 106086320 60070810 * 0.05694710 PRDM1
## 1109 chr6 47358289 106086320 58728032 * 0.06234299 PRDM1
## 1110 chr6 47455902 106086320 58630419 * 0.10106423 PRDM1
## 1111 chr6 49455177 106086320 56631144 * 0.09569797 PRDM1
## 1112 chr6 52156048 106086320 53930273 * 0.05680606 PRDM1
## 1113 chr6 52180951 106086320 53905370 * 0.05001857 PRDM1
## 1114 chr6 52251358 106086320 53834963 * 0.05335776 PRDM1
## 1115 chr6 52394305 106086320 53692016 * 0.09790328 PRDM1
## 1116 chr6 52498211 106086320 53588110 * 0.07655129 PRDM1
## 1117 chr6 52529291 106086320 53557030 * 0.10508404 PRDM1
## 1118 chr6 52536863 106086320 53549458 * 0.18482387 PRDM1
## 1119 chr6 52546480 106086320 53539841 * 0.05264534 PRDM1
## 1120 chr6 52552241 106086320 53534080 * 0.06050550 PRDM1
## 1121 chr6 52566354 106086320 53519967 * 0.05015691 PRDM1
## 1122 chr6 53461505 106086320 52624816 * -0.05491145 PRDM1
## 1123 chr6 56542629 106086320 49543692 * 0.05959437 PRDM1
## 1124 chr6 56593955 106086320 49492366 * 0.05266494 PRDM1
## 1125 chr6 56689181 106086320 49397140 * 0.05332264 PRDM1
## 1126 chr6 56758270 106086320 49328051 * 0.08628527 PRDM1
## 1127 chr6 56766999 106086320 49319322 * 0.08474042 PRDM1
## 1128 chr6 63553413 106086320 42532908 * 0.05867824 PRDM1
## 1129 chr6 63586967 106086320 42499354 * 0.05361127 PRDM1
## 1130 chr6 70131481 106086320 35954840 * 0.09879437 PRDM1
## 1131 chr6 70538559 106086320 35547762 * 0.05114699 PRDM1
## 1132 chr6 70586238 106086320 35500083 * 0.13334588 PRDM1
## 1133 chr6 70693207 106086320 35393114 * 0.06500221 PRDM1
## 1134 chr6 71443615 106086320 34642706 * 0.05832681 PRDM1
## 1135 chr6 71496072 106086320 34590249 * 0.08146779 PRDM1
## 1136 chr6 72367592 106086320 33718729 * 0.05460985 PRDM1
## 1137 chr6 72636131 106086320 33450190 * 0.08625262 PRDM1
## 1138 chr6 72683835 106086320 33402486 * 0.05423990 PRDM1
## 1139 chr6 72689435 106086320 33396886 * 0.06689413 PRDM1
## 1140 chr6 73231990 106086320 32854331 * 0.05387414 PRDM1
## 1141 chr6 73303790 106086320 32782531 * 0.05851839 PRDM1
## 1142 chr6 73560718 106086320 32525603 * 0.06784679 PRDM1
## 1143 chr6 73817396 106086320 32268925 * 0.05735938 PRDM1
## 1144 chr6 74577740 106086320 31508581 * 0.09601089 PRDM1
## 1145 chr6 74578614 106086320 31507707 * 0.06013767 PRDM1
## 1146 chr6 74598464 106086320 31487857 * 0.12689012 PRDM1
## 1147 chr6 74648865 106086320 31437456 * 0.05992937 PRDM1
## 1148 chr6 79070709 106086320 27015612 * 0.06178056 PRDM1
## 1149 chr6 79544651 106086320 26541670 * 0.05456031 PRDM1
## 1150 chr6 79614585 106086320 26471736 * 0.07813091 PRDM1
## 1151 chr6 82144219 106086320 23942102 * 0.05178706 PRDM1
## 1152 chr6 83086868 106086320 22999453 * 0.08421334 PRDM1
## 1153 chr6 87573032 106086320 18513289 * 0.05869967 PRDM1
## 1154 chr6 87636544 106086320 18449777 * 0.08089333 PRDM1
## 1155 chr6 87656881 106086320 18429440 * 0.10280187 PRDM1
## 1156 chr6 87723358 106086320 18362963 * 0.06765611 PRDM1
## 1157 chr6 87905284 106086320 18181037 * 0.05310215 PRDM1
## 1158 chr6 87907692 106086320 18178629 * 0.05341891 PRDM1
## 1159 chr6 87908434 106086320 18177887 * 0.07640005 PRDM1
## 1160 chr6 88567214 106086320 17519107 * 0.07671981 PRDM1
## 1161 chr6 89205920 106086320 16880401 * 0.06543230 PRDM1
## 1162 chr6 89244518 106086320 16841803 * 0.14381646 PRDM1
## 1163 chr6 89304685 106086320 16781636 * 0.06901360 PRDM1
## 1164 chr6 89372348 106086320 16713973 * 0.05454250 PRDM1
## 1165 chr6 89375656 106086320 16710665 * 0.07851902 PRDM1
## 1166 chr6 90251493 106086320 15834828 * 0.05266473 PRDM1
## 1167 chr6 90315737 106086320 15770584 * -0.06088758 PRDM1
## 1168 chr6 90369072 106086320 15717249 * 0.06551726 PRDM1
## 1169 chr6 90375874 106086320 15710447 * -0.06732824 PRDM1
## 1170 chr6 90383020 106086320 15703301 * -0.05446681 PRDM1
## 1171 chr6 95579400 106086320 10506921 * 0.14412168 PRDM1
## 1172 chr6 98777858 106086320 7308463 * 0.11641192 PRDM1
## 1173 chr6 98880640 106086320 7205681 * 0.05318942 PRDM1
## 1174 chr6 99190159 106086320 6896162 * 0.05011168 PRDM1
## 1175 chr6 99333173 106086320 6753148 * 0.06114792 PRDM1
## 1176 chr6 100664780 106086320 5421541 * 0.09640521 PRDM1
## 1177 chr6 100809503 106086320 5276818 * 0.06006135 PRDM1
## 1178 chr6 101011195 106086320 5075126 * 0.05811432 PRDM1
## 1179 chr6 105485608 106086320 600713 * 0.12045273 PRDM1
## 1180 chr6 105489244 106086320 597077 * 0.06354858 PRDM1
## 1181 chr6 105493558 106086320 592763 * 0.05455040 PRDM1
## 1182 chr6 105560793 106086320 525528 * 0.11222269 PRDM1
## 1183 chr6 105601697 106086320 484624 * 0.07952606 PRDM1
## 1184 chr6 105644125 106086320 442196 * 0.09844549 PRDM1
## 1185 chr6 105646551 106086320 439770 * 0.05469224 PRDM1
## 1186 chr6 105757876 106086320 328445 * 0.16547570 PRDM1
## 1187 chr6 105765416 106086320 320905 * 0.05966861 PRDM1
## 1188 chr6 105774390 106086320 311931 * 0.05491565 PRDM1
## 1189 chr6 105780540 106086320 305781 * 0.05964322 PRDM1
## 1190 chr6 105787394 106086320 298927 * 0.08451021 PRDM1
## 1191 chr6 105791616 106086320 294705 * 0.12003634 PRDM1
## 1192 chr6 105810613 106086320 275708 * 0.06349461 PRDM1
## 1193 chr6 105835484 106086320 250837 * 0.10150092 PRDM1
## 1194 chr6 105871269 106086320 215052 * 0.06734910 PRDM1
## 1195 chr6 105873844 106086320 212477 * 0.05855090 PRDM1
## 1196 chr6 105892953 106086320 193368 * 0.10704854 PRDM1
## 1197 chr6 105893903 106086320 192418 * 0.10835846 PRDM1
## 1198 chr6 105896190 106086320 190131 * 0.17367761 PRDM1
## 1199 chr6 105898371 106086320 187950 * 0.10896645 PRDM1
## 1200 chr6 105951208 106086320 135113 * 0.05132557 PRDM1
## 1201 chr6 105981245 106086320 105076 * 0.07032377 PRDM1
## 1202 chr6 106086320 106093794 7475 * 0.07365861 PRDM1
## 1203 chr6 106086320 106101992 15673 * 0.13705674 PRDM1
## 1204 chr6 106086320 106110296 23977 * 0.11009758 PRDM1
## 1205 chr6 106086320 106111804 25485 * 0.05801118 PRDM1
## 1206 chr6 106086320 106145572 59253 * 0.09012828 PRDM1
## 1207 chr6 106086320 106167455 81136 * 0.18918019 PRDM1
## 1208 chr6 106086320 106182447 96128 * 0.07626682 PRDM1
## 1209 chr6 106086320 106220710 134391 * 0.09407840 PRDM1
## 1210 chr6 106086320 106245043 158724 * 0.08607603 PRDM1
## 1211 chr6 106086320 106246255 159936 * 0.06465642 PRDM1
## 1212 chr6 106086320 106273253 186934 * 0.06200708 PRDM1
## 1213 chr6 106086320 106274334 188015 * 0.07903807 PRDM1
## 1214 chr6 106086320 107536334 1450015 * 0.06139943 PRDM1
## 1215 chr6 106086320 108542294 2455975 * 0.06632989 PRDM1
## 1216 chr6 106086320 108560689 2474370 * 0.08611648 PRDM1
## 1217 chr6 106086320 108592624 2506305 * 0.05921654 PRDM1
## 1218 chr6 106086320 108594405 2508086 * 0.05427455 PRDM1
## 1219 chr6 106086320 108619194 2532875 * 0.05258031 PRDM1
## 1220 chr6 106086320 108669901 2583582 * 0.07204527 PRDM1
## 1221 chr6 106086320 108673367 2587048 * 0.16878872 PRDM1
## 1222 chr6 106086320 108733727 2647408 * 0.17090674 PRDM1
## 1223 chr6 106086320 108755689 2669370 * 0.15289427 PRDM1
## 1224 chr6 106086320 108767663 2681344 * 0.06442363 PRDM1
## 1225 chr6 106086320 108865980 2779661 * 0.06872233 PRDM1
## 1226 chr6 106086320 108874825 2788506 * 0.08809505 PRDM1
## 1227 chr6 106086320 108883281 2796962 * 0.07268752 PRDM1
## 1228 chr6 106086320 108904803 2818484 * 0.12710716 PRDM1
## 1229 chr6 106086320 109083744 2997425 * 0.10641653 PRDM1
## 1230 chr6 106086320 109460780 3374461 * 0.05619492 PRDM1
## 1231 chr6 106086320 110539769 4453450 * 0.05096399 PRDM1
## 1232 chr6 106086320 111338952 5252633 * 0.08103874 PRDM1
## 1233 chr6 106086320 113755843 7669524 * 0.09868774 PRDM1
## 1234 chr6 106086320 116060308 9973989 * 0.08208212 PRDM1
## 1235 chr6 106086320 116087732 10001413 * 0.08837036 PRDM1
## 1236 chr6 106086320 118485742 12399423 * 0.06972984 PRDM1
## 1237 chr6 106086320 119172384 13086065 * 0.05107202 PRDM1
## 1238 chr6 106086320 119348212 13261893 * 0.05902605 PRDM1
## 1239 chr6 106086320 119370199 13283880 * 0.06118640 PRDM1
## 1240 chr6 106086320 119442882 13356563 * 0.05720441 PRDM1
## 1241 chr6 106086320 119459607 13373288 * 0.06953890 PRDM1
## 1242 chr6 106086320 119463286 13376967 * 0.06089437 PRDM1
## 1243 chr6 106086320 119502204 13415885 * 0.05038046 PRDM1
## 1244 chr6 106086320 119586603 13500284 * 0.09426572 PRDM1
## 1245 chr6 106086320 119749309 13662990 * 0.06350081 PRDM1
## 1246 chr6 106086320 125354780 19268461 * 0.10235444 PRDM1
## 1247 chr6 106086320 125357353 19271034 * 0.09561616 PRDM1
## 1248 chr6 106086320 125597956 19511637 * 0.06224277 PRDM1
## 1249 chr6 106086320 125714691 19628372 * 0.10323356 PRDM1
## 1250 chr6 106086320 125818324 19732005 * 0.06607357 PRDM1
## 1251 chr6 106086320 125910681 19824362 * 0.08607394 PRDM1
## 1252 chr6 106086320 129449123 23362804 * 0.06570265 PRDM1
## 1253 chr6 106086320 129646822 23560503 * 0.05537389 PRDM1
## 1254 chr6 106086320 129860937 23774618 * 0.05852144 PRDM1
## 1255 chr6 106086320 130270336 24184017 * 0.06473795 PRDM1
## 1256 chr6 106086320 130517498 24431179 * 0.06488057 PRDM1
## 1257 chr6 106086320 130776593 24690274 * 0.10667112 PRDM1
## 1258 chr6 106086320 130840236 24753917 * 0.05157074 PRDM1
## 1259 chr6 106086320 130859603 24773284 * 0.10168257 PRDM1
## 1260 chr6 106086320 130865956 24779637 * 0.05956263 PRDM1
## 1261 chr6 106086320 131029775 24943456 * 0.07938251 PRDM1
## 1262 chr6 106086320 131510288 25423969 * 0.12893432 PRDM1
## 1263 chr6 106086320 131946338 25860019 * 0.06786677 PRDM1
## 1264 chr6 106086320 132456824 26370505 * 0.06922334 PRDM1
## 1265 chr6 106086320 134079969 27993650 * 0.06081756 PRDM1
## 1266 chr6 106086320 134827957 28741638 * 0.09367221 PRDM1
## 1267 chr6 106086320 134871109 28784790 * 0.10138744 PRDM1
## 1268 chr6 106086320 135014526 28928207 * 0.06465350 PRDM1
## 1269 chr6 106086320 135102991 29016672 * 0.05325810 PRDM1
## 1270 chr6 106086320 135226693 29140374 * 0.12419627 PRDM1
## 1271 chr6 106086320 136717504 30631185 * 0.05762677 PRDM1
## 1272 chr6 106086320 136767589 30681270 * 0.05489448 PRDM1
## 1273 chr6 106086320 139172611 33086292 * 0.07778543 PRDM1
## 1274 chr6 106086320 139258115 33171796 * 0.13403560 PRDM1
## 1275 chr6 106086320 139580701 33494382 * 0.09352106 PRDM1
## 1276 chr6 106086320 139736640 33650321 * 0.07064457 PRDM1
## 1277 chr6 106086320 139764718 33678399 * 0.08344533 PRDM1
## 1278 chr6 106086320 141463789 35377470 * 0.06748855 PRDM1
## 1279 chr6 106086320 141464648 35378329 * 0.06328084 PRDM1
## 1280 chr6 106086320 143060794 36974475 * 0.05363802 PRDM1
## 1281 chr6 106086320 143615909 37529590 * 0.06745813 PRDM1
## 1282 chr6 106086320 143902156 37815837 * 0.11741095 PRDM1
## 1283 chr6 106086320 144156488 38070169 * 0.05872709 PRDM1
## 1284 chr6 106086320 144285933 38199614 * 0.06318325 PRDM1
## 1285 chr6 106086320 144305963 38219644 * 0.05231800 PRDM1
## 1286 chr6 106086320 144341852 38255533 * 0.05397794 PRDM1
## 1287 chr6 106086320 144354110 38267791 * 0.07971861 PRDM1
## 1288 chr6 106086320 144715344 38629025 * 0.05640626 PRDM1
## 1289 chr6 106086320 145621823 39535504 * 0.07481394 PRDM1
## 1290 chr6 106086320 149187697 43101378 * 0.06227278 PRDM1
## 1291 chr6 106086320 149217630 43131311 * 0.05199721 PRDM1
## 1292 chr6 106086320 149239916 43153597 * 0.13527212 PRDM1
## 1293 chr6 106086320 149651166 43564847 * 0.05384767 PRDM1
## 1294 chr6 106086320 151681612 45595293 * 0.07604084 PRDM1
## 1295 chr6 106086320 151690850 45604531 * 0.05119665 PRDM1
## 1296 chr6 106086320 151702205 45615886 * 0.05285636 PRDM1
## 1297 chr6 106086320 151757754 45671435 * 0.15721289 PRDM1
## 1298 chr6 106086320 151822596 45736277 * 0.05054967 PRDM1
## 1299 chr6 106086320 151905223 45818904 * 0.05949896 PRDM1
## 1300 chr6 106086320 152117826 46031507 * 0.06931962 PRDM1
## 1301 chr6 106086320 154161853 48075534 * 0.07001030 PRDM1
## 1302 chr6 106086320 154686166 48599847 * -0.05062710 PRDM1
## 1303 chr6 106086320 155260821 49174502 * 0.08465668 PRDM1
## 1304 chr6 106086320 156279774 50193455 * 0.06131803 PRDM1
## 1305 chr6 106086320 156395960 50309641 * 0.12607248 PRDM1
## 1306 chr6 106086320 156442078 50355759 * 0.05301549 PRDM1
## 1307 chr6 106086320 156857596 50771277 * 0.14109658 PRDM1
## 1308 chr6 106086320 157203522 51117203 * 0.10668936 PRDM1
## 1309 chr6 106086320 157402098 51315779 * 0.05599145 PRDM1
## 1310 chr6 106086320 157571260 51484941 * 0.05134028 PRDM1
## 1311 chr6 106086320 157577727 51491408 * 0.05918104 PRDM1
## 1312 chr6 106086320 157585489 51499170 * 0.06829499 PRDM1
## 1313 chr6 106086320 157800895 51714576 * 0.09869882 PRDM1
## 1314 chr6 106086320 157879842 51793523 * 0.08483246 PRDM1
## 1315 chr6 106086320 157888071 51801752 * 0.06427369 PRDM1
## 1316 chr6 106086320 158792004 52705685 * 0.05487861 PRDM1
## 1317 chr6 106086320 159019739 52933420 * 0.05327615 PRDM1
## 1318 chr6 106086320 159033563 52947244 * 0.07650896 PRDM1
## 1319 chr6 106086320 159116978 53030659 * -0.05415115 PRDM1
## 1320 chr6 106086320 163637571 57551252 * 0.06584307 PRDM1
## 1321 chr6 106086320 163738852 57652533 * 0.05297231 PRDM1
## 1322 chr6 106086320 166088539 60002220 * 0.05458605 PRDM1
## 1323 chr6 106086320 166109756 60023437 * 0.06455247 PRDM1
## 1324 chr6 106086320 166325606 60239287 * 0.05610284 PRDM1
## 1325 chr6 106086320 166382786 60296467 * 0.05069378 PRDM1
## 1326 chr6 106086320 166419467 60333148 * 0.09666516 PRDM1
## 1327 chr6 106086320 166631160 60544841 * 0.08048917 PRDM1
## 1328 chr6 106086320 169473719 63387400 * 0.15162127 PRDM1
## 1329 chr6 106086320 169544632 63458313 * 0.05116115 PRDM1
## 1330 chr6 106086320 169556713 63470394 * 0.07752764 PRDM1
## 1331 chr6 106086320 169568683 63482364 * 0.11109862 PRDM1
## 1332 chr6 106086320 169607019 63520700 * 0.05803971 PRDM1
## 1333 chr6 106086320 170438570 64352251 * 0.05928181 PRDM1
## peak zscore pvalue
## 1 chr3-277802-279075 2.139513 1.619706e-02
## 2 chr3-468233-468438 1.751028 3.997057e-02
## 3 chr3-1380485-1381960 1.959346 2.503612e-02
## 4 chr3-4100706-4101604 1.894175 2.910087e-02
## 5 chr3-4492144-4494162 1.716505 4.303484e-02
## 6 chr3-4502868-4503806 3.147473 8.234424e-04
## 7 chr3-4977216-4979817 -3.464104 2.660005e-04
## 8 chr3-4983777-4984537 -2.239664 1.255637e-02
## 9 chr3-5178009-5178512 2.556210 5.290967e-03
## 10 chr3-5181364-5182194 2.901473 1.857063e-03
## 11 chr3-5182896-5183096 5.987161 1.067678e-09
## 12 chr3-5185131-5185368 3.363198 3.852250e-04
## 13 chr3-5186161-5186403 3.401619 3.349401e-04
## 14 chr3-8501296-8501964 2.002691 2.260523e-02
## 15 chr3-8657833-8659020 1.910297 2.804749e-02
## 16 chr3-8953335-8953687 1.754676 3.965736e-02
## 17 chr3-8954674-8955529 1.853903 3.187651e-02
## 18 chr3-9644466-9644778 2.420554 7.748430e-03
## 19 chr3-9652401-9654230 3.790392 7.520485e-05
## 20 chr3-9720885-9722002 1.893521 2.914432e-02
## 21 chr3-9749337-9751150 2.333818 9.802620e-03
## 22 chr3-9751790-9752745 4.396953 5.489043e-06
## 23 chr3-9766053-9766621 3.034453 1.204863e-03
## 24 chr3-9768892-9770604 1.644956 4.998949e-02
## 25 chr3-9779052-9781169 2.982427 1.429865e-03
## 26 chr3-9986160-9987656 1.768052 3.852615e-02
## 27 chr3-10170733-10171416 1.656315 4.882898e-02
## 28 chr3-10224747-10226739 3.865107 5.552019e-05
## 29 chr3-10389201-10390816 2.125040 1.679162e-02
## 30 chr3-11549301-11550236 1.868177 3.086868e-02
## 31 chr3-11550239-11550559 2.425306 7.647743e-03
## 32 chr3-11599032-11599502 3.736976 9.312323e-05
## 33 chr3-11601227-11602267 4.346000 6.932144e-06
## 34 chr3-11602855-11603184 3.757291 8.588128e-05
## 35 chr3-11642363-11644102 2.484979 6.477960e-03
## 36 chr3-11718292-11720903 3.033003 1.210664e-03
## 37 chr3-11769566-11771047 1.856831 3.166758e-02
## 38 chr3-12560309-12561182 1.678435 4.663110e-02
## 39 chr3-12661472-12661687 1.780323 3.751156e-02
## 40 chr3-12662592-12664792 1.787535 3.692554e-02
## 41 chr3-12748983-12749837 2.174671 1.482739e-02
## 42 chr3-12784941-12785579 2.356284 9.229396e-03
## 43 chr3-12818472-12819223 2.661371 3.891163e-03
## 44 chr3-12867967-12869511 1.776299 3.784185e-02
## 45 chr3-12881733-12882243 2.083729 1.859243e-02
## 46 chr3-12884473-12884674 2.786905 2.660702e-03
## 47 chr3-12884851-12886618 2.842590 2.237429e-03
## 48 chr3-12889292-12889529 2.976231 1.459073e-03
## 49 chr3-13012260-13012642 1.868565 3.084167e-02
## 50 chr3-13014944-13017018 1.716356 4.304843e-02
## 51 chr3-13331786-13333326 2.764482 2.850659e-03
## 52 chr3-13415511-13415889 2.712113 3.342791e-03
## 53 chr3-13418996-13421473 1.686486 4.585115e-02
## 54 chr3-14175371-14176078 2.016970 2.184931e-02
## 55 chr3-14226006-14226337 1.776376 3.783548e-02
## 56 chr3-14228815-14229428 2.224024 1.307343e-02
## 57 chr3-14319414-14320123 2.228238 1.293232e-02
## 58 chr3-14379736-14380597 2.385654 8.524400e-03
## 59 chr3-14401990-14403681 2.245036 1.238290e-02
## 60 chr3-14407089-14407667 3.948745 3.928100e-05
## 61 chr3-14427869-14428959 2.668314 3.811654e-03
## 62 chr3-14673386-14674046 1.790638 3.667572e-02
## 63 chr3-14685188-14685450 2.028687 2.124510e-02
## 64 chr3-14686446-14686647 3.765894 8.297695e-05
## 65 chr3-14687282-14687897 4.413380 5.088453e-06
## 66 chr3-14688174-14689808 3.520991 2.149687e-04
## 67 chr3-14691092-14691618 3.326812 4.392277e-04
## 68 chr3-14698291-14699394 1.958344 2.509481e-02
## 69 chr3-14721170-14721826 1.788808 3.682286e-02
## 70 chr3-14780732-14781264 1.750422 4.002273e-02
## 71 chr3-14946791-14948860 1.912711 2.789252e-02
## 72 chr3-14988777-14989635 2.266766 1.170225e-02
## 73 chr3-15097724-15099804 1.802475 3.573538e-02
## 74 chr3-15205589-15207417 2.239477 1.256244e-02
## 75 chr3-15217411-15218196 2.685973 3.615945e-03
## 76 chr3-15294580-15295829 2.353126 9.308151e-03
## 77 chr3-15327975-15328345 3.785709 7.663561e-05
## 78 chr3-15330303-15330513 1.705328 4.406668e-02
## 79 chr3-15344835-15346191 1.993260 2.311649e-02
## 80 chr3-15360692-15362872 3.322555 4.459857e-04
## 81 chr3-15600950-15602382 2.128436 1.665047e-02
## 82 chr3-16252334-16253334 1.998990 2.280471e-02
## 83 chr3-16304604-16304803 3.396396 3.413980e-04
## 84 chr3-16371224-16371785 2.259266 1.193342e-02
## 85 chr3-16372399-16372847 1.768700 3.847201e-02
## 86 chr3-16373262-16373773 2.634195 4.216850e-03
## 87 chr3-16377096-16377400 3.467537 2.626260e-04
## 88 chr3-16379873-16380712 1.942495 2.603861e-02
## 89 chr3-16430764-16431751 3.095999 9.807560e-04
## 90 chr3-16432738-16434511 3.937791 4.111761e-05
## 91 chr3-16441561-16441813 1.804795 3.555335e-02
## 92 chr3-16442958-16443691 2.521883 5.836433e-03
## 93 chr3-16447043-16447534 5.170479 1.167472e-07
## 94 chr3-16448623-16448905 1.828169 3.376211e-02
## 95 chr3-16450378-16450628 2.930507 1.692047e-03
## 96 chr3-16451183-16451475 1.943049 2.600511e-02
## 97 chr3-16467269-16468995 1.699244 4.463662e-02
## 98 chr3-16509718-16510333 2.347909 9.439555e-03
## 99 chr3-16511022-16511266 5.047918 2.233259e-07
## 100 chr3-16511606-16513914 3.258525 5.599660e-04
## 101 chr3-16515854-16516237 2.535877 5.608309e-03
## 102 chr3-16516711-16517063 1.701163 4.445616e-02
## 103 chr3-16520285-16521581 2.086498 1.846677e-02
## 104 chr3-16522482-16523174 1.763551 3.890380e-02
## 105 chr3-16589110-16590872 1.751872 3.989793e-02
## 106 chr3-16801053-16802099 1.949078 2.564308e-02
## 107 chr3-16883762-16885747 1.720277 4.269107e-02
## 108 chr3-16893438-16894032 2.798549 2.566639e-03
## 109 chr3-17740641-17740999 2.312094 1.038625e-02
## 110 chr3-18220113-18220513 2.201302 1.385734e-02
## 111 chr3-18223169-18224371 2.174134 1.484755e-02
## 112 chr3-18225491-18225721 1.953345 2.538935e-02
## 113 chr3-18498970-18499993 2.911464 1.798699e-03
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## 410 chr3-72093298-72094093 2.123513 1.685546e-02
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## 412 chr3-72099120-72099716 5.361831 4.119133e-08
## 413 chr3-72100020-72102613 4.507692 3.276827e-06
## 414 chr3-72134645-72135829 1.886258 2.963011e-02
## 415 chr3-72137933-72138856 2.680079 3.680240e-03
## 416 chr3-72147415-72148026 2.268847 1.163882e-02
## 417 chr3-72157755-72158936 2.212984 1.344937e-02
## 418 chr3-72163283-72165112 5.815614 3.020577e-09
## 419 chr3-72185204-72186504 3.313877 4.600598e-04
## 420 chr3-72186692-72187348 2.349434 9.400993e-03
## 421 chr3-72232484-72233218 2.003717 2.255021e-02
## 422 chr3-72255224-72256500 1.887052 2.957670e-02
## 423 chr3-72309517-72311303 2.730382 3.163050e-03
## 424 chr3-72535688-72536027 1.944665 2.590765e-02
## 425 chr3-72536921-72538662 2.367408 8.956597e-03
## 426 chr3-72821998-72822673 1.659351 4.852255e-02
## 427 chr3-72976373-72976803 1.925827 2.706297e-02
## 428 chr3-73448470-73449417 2.648227 4.045763e-03
## 429 chr3-73449768-73450077 3.321592 4.475276e-04
## 430 chr3-73451093-73451955 3.076643 1.046729e-03
## 431 chr3-78130670-78131242 1.696604 4.488573e-02
## 432 chr3-78132894-78133152 1.692588 4.526700e-02
## 433 chr3-81793087-81793817 1.665832 4.787346e-02
## 434 chr3-88008343-88009707 3.218800 6.436411e-04
## 435 chr3-88018859-88020052 3.811262 6.912959e-05
## 436 chr3-88148908-88150700 1.702927 4.429085e-02
## 437 chr3-97761867-97762347 2.170762 1.497460e-02
## 438 chr3-99011527-99013335 4.266499 9.928213e-06
## 439 chr3-100103290-100104731 1.902029 2.858366e-02
## 440 chr3-101577146-101577673 2.710877 3.355278e-03
## 441 chr3-101675779-101677463 2.044581 2.044808e-02
## 442 chr3-101724225-101725837 1.811636 3.502123e-02
## 443 chr3-101791394-101792739 2.234013 1.274112e-02
## 444 chr3-101840622-101841103 2.652932 3.989792e-03
## 445 chr3-104536263-104537666 2.320780 1.014936e-02
## 446 chr3-104547010-104547351 1.716135 4.306862e-02
## 447 chr3-105366115-105370012 2.960590 1.535254e-03
## 448 chr3-105385301-105386607 3.054790 1.126093e-03
## 449 chr3-105387470-105387946 2.257028 1.200317e-02
## 450 chr3-105822660-105823442 1.852443 3.198110e-02
## 451 chr3-106255452-106257467 2.149077 1.581414e-02
## 452 chr3-107323343-107324335 2.780303 2.715411e-03
## 453 chr3-107325220-107325803 1.672532 4.720975e-02
## 454 chr3-107328181-107328380 3.457745 2.723581e-04
## 455 chr3-107428060-107428712 3.100028 9.675123e-04
## 456 chr3-107429719-107432401 2.601810 4.636660e-03
## 457 chr3-107522506-107525726 2.019013 2.174293e-02
## 458 chr3-108123987-108126165 2.486000 6.459402e-03
## 459 chr3-108219288-108219725 2.427101 7.610013e-03
## 460 chr3-111615711-111617150 2.084169 1.857241e-02
## 461 chr3-112108801-112109102 2.653117 3.987613e-03
## 462 chr3-112111638-112112143 2.064254 1.949680e-02
## 463 chr3-112113775-112115021 4.492980 3.511671e-06
## 464 chr3-112115277-112115481 2.082590 1.864431e-02
## 465 chr3-112117837-112118492 2.260938 1.188156e-02
## 466 chr3-112119886-112120750 3.003554 1.334229e-03
## 467 chr3-112121487-112122305 3.952848 3.861321e-05
## 468 chr3-112130017-112130325 4.392877 5.593016e-06
## 469 chr3-112132682-112133868 2.775748 2.753745e-03
## 470 chr3-112136157-112136364 3.929701 4.252584e-05
## 471 chr3-112136921-112137480 2.311972 1.038960e-02
## 472 chr3-112246594-112248174 1.987243 2.344775e-02
## 473 chr3-112270112-112270647 1.758261 3.935159e-02
## 474 chr3-112296847-112298474 1.824848 3.401201e-02
## 475 chr3-112813312-112814988 2.938683 1.648052e-03
## 476 chr3-113744951-113747671 2.790545 2.630969e-03
## 477 chr3-113829822-113831231 2.719927 3.264818e-03
## 478 chr3-114008786-114009172 2.152641 1.567344e-02
## 479 chr3-114213234-114215365 3.177668 7.423240e-04
## 480 chr3-114218773-114219209 3.111853 9.295839e-04
## 481 chr3-114290678-114291823 1.658113 4.864737e-02
## 482 chr3-114427291-114428664 3.213308 6.560771e-04
## 483 chr3-114429472-114430034 2.360677 9.120801e-03
## 484 chr3-114435925-114437302 2.939324 1.644647e-03
## 485 chr3-114437497-114437696 3.224319 6.313625e-04
## 486 chr3-114447519-114447828 3.219892 6.411954e-04
## 487 chr3-114451028-114451702 4.323248 7.687420e-06
## 488 chr3-114453083-114453451 4.612468 1.989575e-06
## 489 chr3-114453906-114455273 2.043822 2.048555e-02
## 490 chr3-114460015-114460776 2.488067 6.421972e-03
## 491 chr3-114464350-114464924 1.936843 2.638225e-02
## 492 chr3-115146000-115148302 2.029828 2.118699e-02
## 493 chr3-115186409-115187604 -2.389808 8.428600e-03
## 494 chr3-115650925-115651960 1.731814 4.165332e-02
## 495 chr3-115652378-115653185 2.343743 9.545657e-03
## 496 chr3-115657078-115657317 2.651357 4.008453e-03
## 497 chr3-116037820-116039076 2.297067 1.080748e-02
## 498 chr3-116886030-116887185 2.406732 8.047985e-03
## 499 chr3-117170830-117171687 2.509476 6.045517e-03
## 500 chr3-117243354-117244392 3.174756 7.498117e-04
## 501 chr3-118782434-118783363 1.709239 4.370339e-02
## 502 chr3-118791918-118792540 1.929686 2.682285e-02
## 503 chr3-119538379-119539951 2.868532 2.061906e-03
## 504 chr3-119549444-119549733 2.359611 9.147063e-03
## 505 chr3-119551631-119552056 4.131450 1.802408e-05
## 506 chr3-119552295-119552575 3.403341 3.328362e-04
## 507 chr3-119555189-119555709 2.156198 1.553409e-02
## 508 chr3-119559257-119559900 2.384677 8.547071e-03
## 509 chr3-119560150-119560415 2.036395 2.085537e-02
## 510 chr3-119562285-119563063 2.307175 1.052254e-02
## 511 chr3-119600368-119601421 2.402593 8.139641e-03
## 512 chr3-119627417-119629302 2.627423 4.301721e-03
## 513 chr3-120093802-120095949 2.179225 1.465747e-02
## 514 chr3-120100886-120102163 1.688733 4.563529e-02
## 515 chr3-120399114-120399886 1.654494 4.901356e-02
## 516 chr3-120680325-120680667 2.005344 2.246312e-02
## 517 chr3-120852221-120852860 1.821068 3.429827e-02
## 518 chr3-120907591-120909044 2.349860 9.390244e-03
## 519 chr3-121545164-121547008 2.697563 3.492455e-03
## 520 chr3-121792863-121793664 1.651658 4.930211e-02
## 521 chr3-121793959-121795284 4.349307 6.828405e-06
## 522 chr3-121808787-121809691 1.979025 2.390657e-02
## 523 chr3-121834215-121836387 2.237522 1.262611e-02
## 524 chr3-121992326-121993198 2.595995 4.715867e-03
## 525 chr3-121994904-121995790 1.872586 3.056277e-02
## 526 chr3-122066656-122068424 2.712292 3.340984e-03
## 527 chr3-122076955-122078894 2.487959 6.423921e-03
## 528 chr3-122091261-122092833 2.581596 4.917228e-03
## 529 chr3-122097270-122097471 2.468579 6.782537e-03
## 530 chr3-123110850-123112580 2.578023 4.968374e-03
## 531 chr3-123152586-123154363 3.855702 5.769900e-05
## 532 chr3-123575847-123577293 2.145201 1.596840e-02
## 533 chr3-123604575-123606536 2.314406 1.032274e-02
## 534 chr3-123610007-123610756 1.698122 4.474236e-02
## 535 chr3-123641982-123642734 1.850689 3.210712e-02
## 536 chr3-125107700-125109228 3.195234 6.985881e-04
## 537 chr3-125109555-125109831 2.174289 1.484172e-02
## 538 chr3-125119473-125121492 1.710849 4.355448e-02
## 539 chr3-125121673-125122010 1.817837 3.454456e-02
## 540 chr3-125145879-125146377 3.774963 8.001580e-05
## 541 chr3-125147050-125147871 2.845702 2.215682e-03
## 542 chr3-125148029-125149199 3.884420 5.128719e-05
## 543 chr3-125153682-125156166 3.591453 1.644201e-04
## 544 chr3-125163612-125165472 2.308794 1.047750e-02
## 545 chr3-125191841-125192787 2.976413 1.458208e-03
## 546 chr3-125349257-125349860 2.711046 3.353562e-03
## 547 chr3-125350504-125351881 2.862275 2.103061e-03
## 548 chr3-125593995-125596010 2.076668 1.891608e-02
## 549 chr3-125915255-125917345 1.700834 4.448710e-02
## 550 chr3-126287206-126288559 2.165880 1.516017e-02
## 551 chr3-127074291-127075640 3.254274 5.684130e-04
## 552 chr3-127079060-127079573 2.504355 6.133737e-03
## 553 chr3-127597271-127599221 2.127841 1.667513e-02
## 554 chr3-127729363-127729909 2.018117 2.178953e-02
## 555 chr3-127733092-127733341 1.803053 3.568994e-02
## 556 chr3-127735773-127736765 2.438897 7.366091e-03
## 557 chr3-127751269-127751473 2.005455 2.245724e-02
## 558 chr3-127753779-127755673 2.304448 1.059876e-02
## 559 chr3-127761191-127762954 1.836810 3.311899e-02
## 560 chr3-127834523-127836848 4.434228 4.620131e-06
## 561 chr3-127841741-127842296 2.654408 3.972390e-03
## 562 chr3-127842570-127845205 6.147842 3.927217e-10
## 563 chr3-128048653-128048893 2.062990 1.955678e-02
## 564 chr3-128094968-128096170 2.526203 5.765147e-03
## 565 chr3-128114042-128114871 1.671231 4.733807e-02
## 566 chr3-128115305-128115553 1.720217 4.269651e-02
## 567 chr3-128674550-128675591 1.650570 4.941320e-02
## 568 chr3-129120220-129122393 2.173586 1.486811e-02
## 569 chr3-129123300-129124007 2.112952 1.730244e-02
## 570 chr3-129160571-129162312 1.663642 4.809196e-02
## 571 chr3-129276034-129276867 3.279808 5.193885e-04
## 572 chr3-129277753-129279845 2.646052 4.071870e-03
## 573 chr3-129281649-129283276 3.156111 7.994404e-04
## 574 chr3-129314811-129315786 1.880788 3.000040e-02
## 575 chr3-129409222-129409855 1.911738 2.795493e-02
## 576 chr3-129425277-129425553 1.691481 4.537244e-02
## 577 chr3-129428124-129429416 2.104655 1.766070e-02
## 578 chr3-129434778-129435389 1.864391 3.113342e-02
## 579 chr3-129436316-129436833 2.327731 9.963193e-03
## 580 chr3-129439225-129440710 1.776069 3.786077e-02
## 581 chr3-129576117-129578689 2.780327 2.715212e-03
## 582 chr3-129582811-129583679 3.361095 3.881706e-04
## 583 chr3-129657039-129657573 2.048376 2.026159e-02
## 584 chr3-129672248-129672686 1.926907 2.699564e-02
## 585 chr3-129673046-129674882 2.659404 3.913953e-03
## 586 chr3-129678998-129679830 1.793374 3.645661e-02
## 587 chr3-129767717-129768255 2.050793 2.014354e-02
## 588 chr3-129823838-129825256 2.216848 1.331674e-02
## 589 chr3-129827707-129828116 2.831479 2.316665e-03
## 590 chr3-130110716-130112732 1.757786 3.939198e-02
## 591 chr3-130900772-130901289 1.776960 3.778738e-02
## 592 chr3-132316815-132317666 2.070647 1.919591e-02
## 593 chr3-132406384-132407384 1.700527 4.451589e-02
## 594 chr3-132564018-132564536 1.799824 3.594421e-02
## 595 chr3-132594961-132596710 2.210187 1.354611e-02
## 596 chr3-132596888-132597337 2.014903 2.195739e-02
## 597 chr3-132624794-132626063 2.128577 1.664462e-02
## 598 chr3-133445109-133445502 3.041824 1.175746e-03
## 599 chr3-133447465-133449229 3.449426 2.808894e-04
## 600 chr3-133466016-133467430 4.103147 2.037839e-05
## 601 chr3-133467616-133468462 2.566100 5.142461e-03
## 602 chr3-133474708-133476011 3.279092 5.207081e-04
## 603 chr3-133476971-133477843 4.057603 2.478947e-05
## 604 chr3-133480276-133480729 3.826832 6.490151e-05
## 605 chr3-133483861-133484549 2.921254 1.743128e-03
## 606 chr3-133489042-133489252 2.219531 1.322531e-02
## 607 chr3-133490439-133492461 3.213430 6.557982e-04
## 608 chr3-133525459-133525923 1.926398 2.702734e-02
## 609 chr3-133572225-133574649 2.321299 1.013535e-02
## 610 chr3-135443778-135444531 2.070782 1.918959e-02
## 611 chr3-136194373-136194729 1.991188 2.323009e-02
## 612 chr3-136249675-136251705 2.292163 1.094811e-02
## 613 chr3-136861144-136863073 1.762163 3.902089e-02
## 614 chr3-136896410-136897574 2.232802 1.278100e-02
## 615 chr3-136925320-136926118 1.649622 4.951011e-02
## 616 chr3-136947533-136947767 1.876618 3.028522e-02
## 617 chr3-136948967-136950923 4.636378 1.772838e-06
## 618 chr3-138060656-138061123 1.648205 4.965530e-02
## 619 chr3-138236927-138237314 1.759112 3.927927e-02
## 620 chr3-138367641-138368149 2.004179 2.252542e-02
## 621 chr3-138370889-138371862 1.831736 3.349539e-02
## 622 chr3-139934489-139936114 1.839662 3.290893e-02
## 623 chr3-140539875-140540761 2.474259 6.675643e-03
## 624 chr3-140941266-140942965 1.743854 4.059231e-02
## 625 chr3-141336605-141338316 2.675751 3.728103e-03
## 626 chr3-141369893-141370571 2.705670 3.408340e-03
## 627 chr3-141379191-141380062 3.639015 1.368417e-04
## 628 chr3-141380966-141381347 2.248247 1.228021e-02
## 629 chr3-141383752-141383980 3.019272 1.266916e-03
## 630 chr3-141385855-141386475 2.775944 2.752085e-03
## 631 chr3-141386674-141387956 3.110613 9.334984e-04
## 632 chr3-141388453-141389045 2.354665 9.269694e-03
## 633 chr3-141400345-141400780 1.984175 2.361818e-02
## 634 chr3-141440920-141441996 2.260983 1.188015e-02
## 635 chr3-141678696-141679565 2.331768 9.856438e-03
## 636 chr3-141990205-141990738 1.773796 3.804848e-02
## 637 chr3-141991233-141991807 1.914741 2.776278e-02
## 638 chr3-143081795-143083220 1.782930 3.729887e-02
## 639 chr3-143084739-143085391 2.104943 1.764811e-02
## 640 chr3-143206797-143207896 2.095490 1.806374e-02
## 641 chr3-143294133-143294730 1.956802 2.518536e-02
## 642 chr3-143565303-143566307 1.793744 3.642699e-02
## 643 chr3-143884045-143884555 1.862096 3.129480e-02
## 644 chr3-143970665-143973422 1.832121 3.346668e-02
## 645 chr3-144482668-144483422 1.789710 3.675030e-02
## 646 chr3-149089448-149089672 1.898243 2.883206e-02
## 647 chr3-149090743-149091189 2.631919 4.245209e-03
## 648 chr3-149144990-149146659 2.139365 1.620304e-02
## 649 chr3-149245383-149246081 1.775124 3.793867e-02
## 650 chr3-150022589-150023966 3.002603 1.338408e-03
## 651 chr3-150407621-150410405 2.562267 5.199563e-03
## 652 chr3-150598187-150599889 2.281275 1.126609e-02
## 653 chr3-150607275-150607526 2.036022 2.087409e-02
## 654 chr3-150740782-150741417 2.165506 1.517448e-02
## 655 chr3-150747216-150747571 1.858790 3.152843e-02
## 656 chr3-150760166-150761120 2.340141 9.638233e-03
## 657 chr3-150762748-150764074 2.129328 1.661356e-02
## 658 chr3-150765609-150767048 5.487699 2.036011e-08
## 659 chr3-151085071-151087264 4.158288 1.603205e-05
## 660 chr3-151377645-151378148 1.869396 3.078388e-02
## 661 chr3-151379439-151379649 3.677401 1.178113e-04
## 662 chr3-151382589-151383078 4.464237 4.017727e-06
## 663 chr3-151383709-151384273 1.841003 3.281056e-02
## 664 chr3-151384617-151385102 2.510755 6.023666e-03
## 665 chr3-151387376-151388114 2.428628 7.578044e-03
## 666 chr3-151391217-151391416 4.015038 2.971807e-05
## 667 chr3-151392985-151393444 2.058510 1.977061e-02
## 668 chr3-151396488-151397064 1.695836 4.495849e-02
## 669 chr3-151397271-151397520 2.653178 3.986891e-03
## 670 chr3-151398624-151399246 2.199171 1.393288e-02
## 671 chr3-151403496-151403695 2.899063 1.871396e-03
## 672 chr3-151409689-151412455 5.318103 5.242733e-08
## 673 chr3-151413031-151413230 5.149403 1.306586e-07
## 674 chr3-151421815-151422267 1.933542 2.658475e-02
## 675 chr3-151425533-151426634 1.763007 3.894963e-02
## 676 chr3-151431700-151432344 1.853428 3.191051e-02
## 677 chr3-151434010-151434466 4.074588 2.304795e-05
## 678 chr3-152197981-152198222 2.428304 7.584818e-03
## 679 chr3-152199227-152199924 1.660980 4.835878e-02
## 680 chr3-152200721-152201314 1.901409 2.862423e-02
## 681 chr3-152253579-152254550 2.292646 1.093420e-02
## 682 chr3-152268291-152270465 2.420749 7.744281e-03
## 683 chr3-152290733-152291981 2.260127 1.190668e-02
## 684 chr3-152302384-152302936 1.996410 2.294463e-02
## 685 chr3-152376306-152377340 1.684216 4.606998e-02
## 686 chr3-152393960-152394634 1.682930 4.619436e-02
## 687 chr3-152446651-152447336 1.734364 4.142674e-02
## 688 chr3-152511836-152512306 2.871940 2.039801e-03
## 689 chr3-152512613-152512894 2.935367 1.665765e-03
## 690 chr3-152513303-152513667 2.903567 1.844691e-03
## 691 chr3-152514076-152514499 1.729690 4.184281e-02
## 692 chr3-152515958-152516618 3.081483 1.029861e-03
## 693 chr3-152520288-152520563 2.602221 4.631114e-03
## 694 chr3-154469417-154469963 1.769280 3.842362e-02
## 695 chr3-154683818-154684372 1.808012 3.530234e-02
## 696 chr3-154760951-154761170 2.205008 1.372675e-02
## 697 chr3-154763933-154764351 3.641508 1.355228e-04
## 698 chr3-154764730-154765029 2.267779 1.167135e-02
## 699 chr3-154765513-154766096 2.250686 1.220272e-02
## 700 chr3-154766283-154767359 2.744818 3.027223e-03
## 701 chr3-154861978-154862970 3.451513 2.787262e-04
## 702 chr3-154863305-154863687 2.093475 1.815341e-02
## 703 chr3-154903677-154904713 2.194843 1.408745e-02
## 704 chr3-155078645-155080446 3.439814 2.910575e-04
## 705 chr3-155100466-155100822 2.049716 2.019610e-02
## 706 chr3-155109876-155110318 3.939117 4.089110e-05
## 707 chr3-155110651-155112539 5.682687 6.629735e-09
## 708 chr3-155112708-155113449 3.671640 1.204996e-04
## 709 chr3-155114206-155114419 3.577815 1.732391e-04
## 710 chr3-155190671-155191225 1.849052 3.222516e-02
## 711 chr3-155210420-155210911 2.081871 1.867711e-02
## 712 chr3-155243688-155245425 3.838353 6.193118e-05
## 713 chr3-155251657-155252430 1.663456 4.811059e-02
## 714 chr3-155372211-155373095 2.626888 4.308488e-03
## 715 chr3-155373387-155373606 1.661321 4.832451e-02
## 716 chr3-155872918-155873137 1.938681 2.627007e-02
## 717 chr3-156797084-156797677 1.908398 2.816992e-02
## 718 chr3-156820293-156820965 2.830289 2.325300e-03
## 719 chr3-157088359-157090103 2.197151 1.400484e-02
## 720 chr3-157102985-157103874 2.160077 1.538335e-02
## 721 chr3-157104888-157105756 1.986700 2.347784e-02
## 722 chr3-157166218-157168110 4.263224 1.007491e-05
## 723 chr3-157170851-157171080 2.331492 9.863717e-03
## 724 chr3-158107617-158107912 2.442460 7.293776e-03
## 725 chr3-158671704-158673072 1.721363 4.259244e-02
## 726 chr3-160135586-160136860 3.284582 5.106690e-04
## 727 chr3-160139327-160139536 2.327222 9.976718e-03
## 728 chr3-160401375-160401613 1.661837 4.827268e-02
## 729 chr3-160448904-160450373 2.007040 2.237269e-02
## 730 chr3-161014848-161016668 4.249900 1.069331e-05
## 731 chr3-161034852-161036242 2.396260 8.281668e-03
## 732 chr3-161041955-161042626 1.738071 4.109917e-02
## 733 chr3-161043087-161044183 3.262379 5.524070e-04
## 734 chr3-161046996-161047208 1.850463 3.212339e-02
## 735 chr3-161050935-161051273 1.734754 4.139215e-02
## 736 chr3-161067044-161067335 2.149065 1.581464e-02
## 737 chr3-161069083-161070440 2.427287 7.606113e-03
## 738 chr3-161104509-161106023 1.761413 3.908426e-02
## 739 chr3-167734060-167735869 2.041855 2.058297e-02
## 740 chr3-167773131-167774777 2.407069 8.040569e-03
## 741 chr3-167775202-167775611 2.817481 2.420103e-03
## 742 chr3-167798074-167799000 2.351000 9.361511e-03
## 743 chr3-168094500-168096598 1.676506 4.681952e-02
## 744 chr3-169660938-169663332 1.824813 3.401463e-02
## 745 chr3-169769286-169769760 2.077088 1.889674e-02
## 746 chr3-169771573-169773820 2.845479 2.217237e-03
## 747 chr3-169811712-169814383 2.010694 2.217887e-02
## 748 chr3-169840954-169841611 1.851229 3.206834e-02
## 749 chr3-169846076-169847179 2.672706 3.762103e-03
## 750 chr3-169931307-169932817 2.318546 1.020983e-02
## 751 chr3-169939346-169941188 2.513228 5.981604e-03
## 752 chr3-169977981-169978944 2.474538 6.670432e-03
## 753 chr3-170037421-170039127 2.938100 1.651154e-03
## 754 chr3-170054199-170054495 2.266651 1.170579e-02
## 755 chr3-170055149-170055945 2.486144 6.456792e-03
## 756 chr3-170056498-170057308 3.336674 4.239362e-04
## 757 chr3-170058104-170058460 2.083006 1.862534e-02
## 758 chr3-170058928-170059133 2.378944 8.681152e-03
## 759 chr3-170075500-170077147 4.813598 7.411846e-07
## 760 chr3-170083121-170083746 2.482596 6.521450e-03
## 761 chr3-170128183-170129474 2.363260 9.057471e-03
## 762 chr3-170296645-170297112 2.004346 2.251652e-02
## 763 chr3-170355890-170358587 1.961585 2.490541e-02
## 764 chr3-170632433-170633231 2.786368 2.665116e-03
## 765 chr3-170634257-170635170 3.328767 4.361575e-04
## 766 chr3-170907648-170909036 2.043032 2.052464e-02
## 767 chr3-177036407-177037626 2.364507 9.027048e-03
## 768 chr3-177060353-177061028 1.821099 3.429589e-02
## 769 chr3-177089576-177090932 1.855092 3.179156e-02
## 770 chr3-177251559-177252093 1.662310 4.822532e-02
## 771 chr3-177317884-177318870 2.435951 7.426342e-03
## 772 chr3-177319441-177319854 1.756119 3.953402e-02
## 773 chr3-177320465-177321168 1.711177 4.352421e-02
## 774 chr3-177343758-177344027 1.779517 3.757752e-02
## 775 chr3-177345127-177345981 1.784860 3.714203e-02
## 776 chr3-177350411-177350939 2.635210 4.204268e-03
## 777 chr3-177351355-177352424 3.251220 5.745550e-04
## 778 chr3-177357887-177360705 2.499825 6.212735e-03
## 779 chr3-178966437-178967471 2.155213 1.557258e-02
## 780 chr3-179146969-179149813 1.747190 4.030223e-02
## 781 chr3-179265591-179267210 2.679506 3.686541e-03
## 782 chr3-179346381-179348677 1.950875 2.553594e-02
## 783 chr3-179562281-179563770 1.983734 2.364276e-02
## 784 chr3-179880576-179881017 1.942081 2.606368e-02
## 785 chr3-179897955-179898305 1.758595 3.932320e-02
## 786 chr3-179956063-179956906 1.993671 2.309399e-02
## 787 chr3-179961143-179962034 1.687656 4.573867e-02
## 788 chr3-180679013-180680334 2.010033 2.221386e-02
## 789 chr3-181701812-181702384 1.706974 4.391343e-02
## 790 chr3-181711108-181712025 2.131161 1.653794e-02
## 791 chr3-181906194-181907255 2.191261 1.421644e-02
## 792 chr3-181985047-181986041 2.989701 1.396253e-03
## 793 chr3-182325049-182325885 2.489088 6.403564e-03
## 794 chr3-182348629-182350427 1.742325 4.072579e-02
## 795 chr3-182412966-182414067 2.499924 6.210993e-03
## 796 chr3-182966534-182968163 1.650903 4.937915e-02
## 797 chr3-183044300-183045903 3.457180 2.729298e-04
## 798 chr3-183115714-183116632 2.998332 1.357307e-03
## 799 chr3-183259639-183260769 2.077962 1.885642e-02
## 800 chr3-183484494-183484885 2.435398 7.437701e-03
## 801 chr3-183485077-183485755 1.676582 4.681217e-02
## 802 chr3-183535729-183536915 2.020307 2.167576e-02
## 803 chr3-183543155-183543354 3.086073 1.014093e-03
## 804 chr3-183551833-183553054 4.055516 2.501183e-05
## 805 chr3-183553431-183553945 2.679091 3.691114e-03
## 806 chr3-183554313-183554720 2.421914 7.719500e-03
## 807 chr3-183564038-183564872 2.547265 5.428542e-03
## 808 chr3-183569356-183569784 3.106271 9.473136e-04
## 809 chr3-183570190-183570977 2.825486 2.360450e-03
## 810 chr3-183572680-183573403 3.876375 5.301219e-05
## 811 chr3-183576480-183576739 4.104404 2.026790e-05
## 812 chr3-183578302-183579122 3.269891 5.379452e-04
## 813 chr3-183579690-183580593 3.281283 5.166793e-04
## 814 chr3-183585498-183585929 4.735061 1.094948e-06
## 815 chr3-183586357-183586802 2.601253 4.644196e-03
## 816 chr3-183587211-183587692 3.392161 3.467180e-04
## 817 chr3-183591134-183593153 5.373000 3.871875e-08
## 818 chr3-183635164-183637134 1.996237 2.295407e-02
## 819 chr3-183697200-183699194 2.171832 1.493417e-02
## 820 chr3-183937321-183938115 1.994518 2.304774e-02
## 821 chr3-184560992-184562392 1.979902 2.385728e-02
## 822 chr3-184663941-184664862 1.867074 3.094560e-02
## 823 chr3-184755394-184756832 5.470528 2.243483e-08
## 824 chr3-185056959-185057200 2.303307 1.063080e-02
## 825 chr3-185060493-185060828 1.712658 4.338776e-02
## 826 chr3-185062794-185063774 2.190687 1.423724e-02
## 827 chr3-185064911-185065380 2.118315 1.707422e-02
## 828 chr3-185080289-185080847 1.717482 4.294556e-02
## 829 chr3-185280500-185281068 2.195224 1.407375e-02
## 830 chr3-185353799-185354596 2.845482 2.217215e-03
## 831 chr3-185740381-185741032 1.889445 2.941610e-02
## 832 chr3-186107634-186109605 2.135527 1.635901e-02
## 833 chr3-186225511-186225981 2.053193 2.002692e-02
## 834 chr3-186226242-186226581 1.964966 2.470906e-02
## 835 chr3-186227304-186228423 1.864815 3.110370e-02
## 836 chr3-186235004-186235982 2.148075 1.585389e-02
## 837 chr3-186241665-186242878 2.136332 1.632618e-02
## 838 chr3-186254352-186256323 1.872789 3.054876e-02
## 839 chr3-186330419-186331710 2.421613 7.725901e-03
## 840 chr3-186332800-186333057 1.707044 4.390693e-02
## 841 chr3-186338774-186339929 2.273881 1.148656e-02
## 842 chr3-186514347-186514549 1.787030 3.696636e-02
## 843 chr3-186525443-186526632 2.496217 6.276290e-03
## 844 chr3-186992091-186992380 2.340280 9.634640e-03
## 845 chr3-186992771-186993505 2.198243 1.396590e-02
## 846 chr3-186995986-186996756 1.688863 4.562288e-02
## 847 chr3-187013299-187013806 3.333775 4.283797e-04
## 848 chr3-187015800-187016957 4.169682 1.525124e-05
## 849 chr3-187017479-187017721 2.695212 3.517193e-03
## 850 chr3-187023980-187024309 3.556917 1.876165e-04
## 851 chr3-187026036-187026333 2.181429 1.457584e-02
## 852 chr3-187030801-187031791 1.673905 4.707465e-02
## 853 chr3-187064306-187065805 3.852736 5.840265e-05
## 854 chr3-187066198-187066984 1.919250 2.747634e-02
## 855 chr3-187138773-187139969 1.738567 4.105544e-02
## 856 chr3-187718888-187719151 2.759321 2.896079e-03
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## 858 chr3-187743638-187744009 2.283899 1.118872e-02
## 859 chr3-187746780-187747011 2.944736 1.616150e-03
## 860 chr3-187748037-187748306 2.483494 6.505022e-03
## 861 chr3-187749785-187750803 2.605694 4.584420e-03
## 862 chr3-187828512-187829370 1.827183 3.383612e-02
## 863 chr3-187898560-187898856 3.085546 1.015894e-03
## 864 chr3-187899192-187899544 3.209714 6.643351e-04
## 865 chr3-187900664-187902609 6.708238 9.849424e-12
## 866 chr3-187917181-187917704 2.730372 3.163146e-03
## 867 chr3-187918202-187918430 2.622177 4.368502e-03
## 868 chr3-187918636-187919996 2.100681 1.783448e-02
## 869 chr3-187923078-187923294 3.549977 1.926327e-04
## 870 chr3-187926343-187926992 2.987832 1.404822e-03
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## 872 chr3-187932115-187933313 4.095195 2.109066e-05
## 873 chr3-187935433-187936272 2.970041 1.488802e-03
## 874 chr3-187939887-187940377 4.945056 3.806098e-07
## 875 chr3-187942499-187943146 2.956019 1.558189e-03
## 876 chr3-187944408-187945712 3.986452 3.353429e-05
## 877 chr3-187946069-187946339 6.451763 5.527806e-11
## 878 chr3-187946499-187947359 3.772501 8.080975e-05
## 879 chr3-187951638-187952190 2.602844 4.622696e-03
## 880 chr3-187957842-187959006 3.911011 4.595536e-05
## 881 chr3-187963083-187963679 3.370130 3.756636e-04
## 882 chr3-187966728-187968221 4.365616 6.338252e-06
## 883 chr3-187969198-187969917 5.032270 2.423530e-07
## 884 chr3-187973966-187974279 3.349738 4.044400e-04
## 885 chr3-187974578-187975203 2.386327 8.508810e-03
## 886 chr3-187975588-187976720 4.155411 1.623514e-05
## 887 chr3-187978448-187978998 4.102596 2.042700e-05
## 888 chr3-187979299-187979942 3.490382 2.411648e-04
## 889 chr3-187981933-187982515 3.568622 1.794321e-04
## 890 chr3-187999620-188000815 1.688024 4.570336e-02
## 891 chr3-188006508-188007101 1.980316 2.383404e-02
## 892 chr3-188060829-188061596 1.861641 3.132684e-02
## 893 chr3-188084738-188085731 4.992462 2.980723e-07
## 894 chr3-188085956-188086723 3.603393 1.570450e-04
## 895 chr3-188087321-188088252 5.604163 1.046318e-08
## 896 chr3-188092575-188093084 5.718500 5.373436e-09
## 897 chr3-188097506-188098187 2.330343 9.894005e-03
## 898 chr3-188104435-188104864 1.776153 3.785388e-02
## 899 chr3-188108398-188109630 1.997517 2.288451e-02
## 900 chr3-188174315-188174953 1.830299 3.360261e-02
## 901 chr3-188175553-188176021 1.725162 4.224914e-02
## 902 chr3-188179223-188179879 2.137792 1.626680e-02
## 903 chr3-188213668-188214799 2.124152 1.682870e-02
## 904 chr3-188236207-188236893 4.984000 3.114158e-07
## 905 chr3-188238989-188239511 5.303941 5.666460e-08
## 906 chr3-188241997-188242988 3.002999 1.336668e-03
## 907 chr3-188244271-188244731 2.206745 1.366595e-02
## 908 chr3-188293938-188294362 2.835167 2.290088e-03
## 909 chr3-188303458-188304125 2.540211 5.539273e-03
## 910 chr3-188306404-188307275 2.582703 4.901482e-03
## 911 chr3-188312009-188312271 2.517158 5.915293e-03
## 912 chr3-188581213-188582621 1.940178 2.617900e-02
## 913 chr3-188693072-188693738 3.000780 1.346447e-03
## 914 chr3-188696878-188697566 5.306724 5.580661e-08
## 915 chr3-188699206-188699521 2.344595 9.523875e-03
## 916 chr3-188700629-188701240 1.738768 4.103779e-02
## 917 chr3-188701482-188702003 1.821446 3.426951e-02
## 918 chr3-188726865-188727388 2.291985 1.095327e-02
## 919 chr3-188728609-188729849 1.807367 3.535256e-02
## 920 chr3-188747626-188747864 2.284775 1.116300e-02
## 921 chr3-188752478-188754622 4.821389 7.128085e-07
## 922 chr3-188756052-188756656 2.594095 4.742013e-03
## 923 chr3-189288312-189289553 1.838984 3.295878e-02
## 924 chr3-189324335-189325287 1.933633 2.657912e-02
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## 926 chr3-189511773-189512595 2.608212 4.550824e-03
## 927 chr3-191105110-191105814 2.034361 2.095760e-02
## 928 chr3-192041704-192042653 2.859535 2.121314e-03
## 929 chr3-192131812-192132174 2.360698 9.120287e-03
## 930 chr3-192182654-192183616 2.427055 7.610984e-03
## 931 chr3-192183766-192184190 1.820009 3.437879e-02
## 932 chr3-194074606-194074921 2.150102 1.577356e-02
## 933 chr3-194100746-194101766 2.078039 1.885289e-02
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## 935 chr3-194107028-194107537 1.769556 3.840057e-02
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## 937 chr3-194485786-194488340 2.164994 1.519409e-02
## 938 chr3-194686741-194688559 2.308536 1.048468e-02
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## 940 chr3-194691463-194692316 2.533493 5.646594e-03
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## 942 chr3-194736126-194737707 2.928178 1.704776e-03
## 943 chr3-195269904-195272303 2.228368 1.292798e-02
## 944 chr3-195281910-195282433 2.252035 1.216004e-02
## 945 chr3-195393166-195395009 4.316462 7.927489e-06
## 946 chr3-195395267-195395706 3.129531 8.754269e-04
## 947 chr3-195396958-195397377 1.982471 2.371328e-02
## 948 chr3-195441611-195443504 2.094068 1.812694e-02
## 949 chr3-195542091-195543943 1.832439 3.344298e-02
## 950 chr3-195838345-195839493 1.918495 2.752416e-02
## 951 chr3-195894583-195896543 1.715101 4.316331e-02
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## 953 chr3-196070772-196071446 2.490132 6.384782e-03
## 954 chr3-196080924-196082737 1.926502 2.702086e-02
## 955 chr3-196114676-196116062 3.476252 2.542370e-04
## 956 chr3-196117801-196118199 1.956872 2.518124e-02
## 957 chr3-196118451-196118714 2.043215 2.051559e-02
## 958 chr3-196179289-196180376 1.699961 4.456913e-02
## 959 chr3-196350649-196352282 2.139046 1.621596e-02
## 960 chr3-196502048-196504061 2.201195 1.386110e-02
## 961 chr3-196697176-196697647 2.082087 1.866726e-02
## 962 chr3-196739295-196741312 1.679282 4.654857e-02
## 963 chr3-196930929-196933008 2.814266 2.444439e-03
## 964 chr3-196962136-196963228 1.710295 4.360566e-02
## 965 chr3-197139176-197140644 2.124043 1.683326e-02
## 966 chr3-197174678-197175918 2.466534 6.821391e-03
## 967 chr3-197181680-197182238 2.144408 1.600012e-02
## 968 chr3-197297223-197299151 1.794767 3.634544e-02
## 969 chr3-197501435-197502314 3.063485 1.093874e-03
## 970 chr3-197782132-197782763 1.818483 3.449519e-02
## 971 chr3-197783955-197784869 2.310914 1.041881e-02
## 972 chr3-197785069-197785524 3.051384 1.138943e-03
## 973 chr3-197790061-197792240 3.292280 4.968932e-04
## 974 chr3-197833848-197835853 1.671884 4.727358e-02
## 975 chr3-197938085-197938606 1.661838 4.827262e-02
## 976 chr6-229063-229458 4.659211 1.587116e-06
## 977 chr6-257424-258200 4.955804 3.601589e-07
## 978 chr6-259683-260288 2.659873 3.908508e-03
## 979 chr6-296198-296965 3.079418 1.037026e-03
## 980 chr6-305184-306221 7.045581 9.234492e-13
## 981 chr6-316396-316808 4.355071 6.651180e-06
## 982 chr6-319579-320099 8.280466 6.134713e-17
## 983 chr6-322705-323306 9.876924 2.620859e-23
## 984 chr6-327849-328703 6.933179 2.057431e-12
## 985 chr6-330347-330664 5.477426 2.157781e-08
## 986 chr6-331598-332358 4.854221 6.043041e-07
## 987 chr6-341905-342380 3.428058 3.039580e-04
## 988 chr6-355592-356334 2.918782 1.757007e-03
## 989 chr6-364471-365213 4.568696 2.453839e-06
## 990 chr6-411509-411708 6.864094 3.345720e-12
## 991 chr6-722629-722897 4.399380 5.428030e-06
## 992 chr6-1796889-1797907 5.648841 8.076658e-09
## 993 chr6-1821614-1822222 4.971687 3.318639e-07
## 994 chr6-1942502-1943404 3.860116 5.666665e-05
## 995 chr6-2230853-2231300 3.648175 1.320549e-04
## 996 chr6-2542748-2543195 3.533727 2.048720e-04
## 997 chr6-2563514-2564091 2.711311 3.350882e-03
## 998 chr6-2640975-2641378 4.393758 5.570393e-06
## 999 chr6-2706422-2706861 2.759142 2.897667e-03
## 1000 chr6-4879367-4880103 4.407068 5.238973e-06
## 1001 chr6-5072028-5072763 2.823240 2.377046e-03
## 1002 chr6-5869315-5869969 5.216553 9.114172e-08
## 1003 chr6-6406497-6407904 -2.435430 7.437050e-03
## 1004 chr6-6918407-6918850 3.246172 5.848416e-04
## 1005 chr6-7155805-7156989 3.173736 7.524530e-04
## 1006 chr6-7689517-7689945 3.304352 4.759819e-04
## 1007 chr6-7721691-7722032 3.643699 1.343738e-04
## 1008 chr6-7878025-7879305 3.770482 8.146630e-05
## 1009 chr6-7879942-7880171 3.563095 1.832537e-04
## 1010 chr6-7897590-7898157 4.035255 2.727152e-05
## 1011 chr6-7960664-7961213 2.698123 3.486583e-03
## 1012 chr6-7962664-7963880 3.728249 9.640736e-05
## 1013 chr6-8065540-8065882 3.723789 9.812748e-05
## 1014 chr6-8110184-8110703 3.109812 9.360328e-04
## 1015 chr6-8336920-8337504 5.782076 3.689218e-09
## 1016 chr6-10626244-10626747 3.403549 3.325820e-04
## 1017 chr6-10713995-10714378 6.131215 4.360535e-10
## 1018 chr6-11198697-11199329 4.166022 1.549805e-05
## 1019 chr6-11386267-11386689 4.363741 6.392842e-06
## 1020 chr6-11411877-11413474 2.713233 3.331515e-03
## 1021 chr6-11734896-11735237 4.048445 2.577949e-05
## 1022 chr6-11833753-11834606 5.471268 2.234131e-08
## 1023 chr6-12320080-12320378 3.427070 3.050656e-04
## 1024 chr6-13655673-13656043 4.626465 1.859797e-06
## 1025 chr6-14382017-14382902 4.413410 5.087745e-06
## 1026 chr6-14472864-14473422 5.252512 7.501927e-08
## 1027 chr6-15255483-15255860 3.569868 1.785805e-04
## 1028 chr6-16473146-16473548 3.192141 7.061108e-04
## 1029 chr6-16483001-16484426 3.584248 1.690251e-04
## 1030 chr6-16503482-16505109 2.725901 3.206308e-03
## 1031 chr6-16508481-16509034 4.837807 6.563972e-07
## 1032 chr6-16511799-16512454 3.533913 2.047276e-04
## 1033 chr6-16521320-16522166 5.278591 6.509061e-08
## 1034 chr6-16540720-16541535 3.686033 1.138882e-04
## 1035 chr6-16836308-16836819 3.496244 2.359287e-04
## 1036 chr6-17664194-17664576 3.550358 1.923535e-04
## 1037 chr6-20542908-20543590 7.348531 1.001982e-13
## 1038 chr6-21438168-21439524 3.104335 9.535371e-04
## 1039 chr6-24482919-24483522 6.452745 5.492092e-11
## 1040 chr6-24513455-24513965 2.617402 4.430101e-03
## 1041 chr6-25106941-25107600 3.324668 4.426196e-04
## 1042 chr6-25130913-25131455 4.503351 3.344509e-06
## 1043 chr6-25411345-25412019 2.913369 1.787756e-03
## 1044 chr6-25474633-25475177 2.744089 3.033958e-03
## 1045 chr6-25851906-25852224 2.690504 3.567214e-03
## 1046 chr6-26341468-26342570 2.702134 3.444804e-03
## 1047 chr6-26358222-26358964 3.250995 5.750088e-04
## 1048 chr6-26360351-26361253 8.779840 8.185382e-19
## 1049 chr6-26534804-26535138 6.579846 2.354679e-11
## 1050 chr6-27250711-27252153 5.549846 1.429607e-08
## 1051 chr6-28218264-28219124 3.863837 5.580992e-05
## 1052 chr6-30425359-30425633 3.178754 7.395469e-04
## 1053 chr6-30428012-30428568 2.265916 1.172826e-02
## 1054 chr6-30742025-30744724 3.241359 5.948064e-04
## 1055 chr6-31190298-31190792 4.423285 4.860564e-06
## 1056 chr6-31908624-31909191 4.577992 2.347302e-06
## 1057 chr6-32273744-32274056 2.226003 1.300699e-02
## 1058 chr6-33645556-33645886 4.440280 4.492104e-06
## 1059 chr6-34655954-34657770 3.024272 1.246163e-03
## 1060 chr6-35036230-35037101 3.051986 1.136662e-03
## 1061 chr6-35580717-35581085 3.356161 3.951625e-04
## 1062 chr6-35581534-35581817 3.798522 7.278071e-05
## 1063 chr6-36168907-36169721 3.112318 9.281207e-04
## 1064 chr6-36379773-36380132 4.099140 2.073440e-05
## 1065 chr6-36516323-36516857 2.969820 1.489871e-03
## 1066 chr6-36666919-36667555 3.656626 1.277782e-04
## 1067 chr6-36752767-36753511 3.865812 5.536000e-05
## 1068 chr6-36793688-36794441 3.962804 3.703724e-05
## 1069 chr6-37102110-37103655 3.620314 1.471231e-04
## 1070 chr6-37260052-37260354 2.785459 2.672601e-03
## 1071 chr6-37317274-37317926 4.940445 3.897229e-07
## 1072 chr6-37497673-37498166 4.466838 3.969209e-06
## 1073 chr6-37507908-37508181 6.822972 4.458816e-12
## 1074 chr6-38320750-38321229 3.557924 1.868988e-04
## 1075 chr6-38805891-38806572 2.783464 2.689096e-03
## 1076 chr6-39472107-39472886 3.344982 4.114391e-04
## 1077 chr6-39530005-39530835 5.131311 1.438654e-07
## 1078 chr6-39565319-39566234 4.578535 2.341219e-06
## 1079 chr6-40240849-40241083 2.794878 2.595962e-03
## 1080 chr6-41246154-41246420 3.525450 2.113820e-04
## 1081 chr6-41255494-41256764 11.530242 4.644105e-31
## 1082 chr6-42176674-42177335 3.606222 1.553438e-04
## 1083 chr6-42229791-42230632 2.347495 9.450063e-03
## 1084 chr6-42238547-42239327 6.597608 2.089224e-11
## 1085 chr6-42269084-42270318 4.766159 9.388575e-07
## 1086 chr6-42610291-42610842 4.916228 4.411377e-07
## 1087 chr6-43702579-43703113 3.377971 3.651143e-04
## 1088 chr6-43713585-43715716 4.075403 2.296736e-05
## 1089 chr6-44218990-44219902 4.552067 2.656069e-06
## 1090 chr6-44415221-44415848 5.418170 3.010609e-08
## 1091 chr6-44524698-44525203 4.520949 3.078154e-06
## 1092 chr6-44662371-44663002 8.985156 1.291832e-19
## 1093 chr6-44977038-44977657 3.131664 8.690941e-04
## 1094 chr6-45001679-45002019 3.250092 5.768376e-04
## 1095 chr6-45143530-45143849 2.076199 1.893778e-02
## 1096 chr6-45155860-45156431 2.698454 3.483120e-03
## 1097 chr6-45416104-45416468 2.882768 1.970991e-03
## 1098 chr6-45556214-45556505 3.932554 4.202413e-05
## 1099 chr6-45558777-45559204 2.343404 9.554340e-03
## 1100 chr6-45709626-45710841 6.515417 3.624392e-11
## 1101 chr6-45737360-45737914 4.788376 8.406821e-07
## 1102 chr6-45808703-45809313 2.638077 4.168882e-03
## 1103 chr6-45813881-45814298 8.303929 5.036206e-17
## 1104 chr6-45920673-45921426 3.549772 1.927826e-04
## 1105 chr6-45966843-45967078 6.659431 1.374449e-11
## 1106 chr6-45990131-45990542 3.900751 4.794744e-05
## 1107 chr6-46011057-46011856 2.460676 6.933767e-03
## 1108 chr6-46014990-46016032 4.182406 1.442200e-05
## 1109 chr6-47357727-47358850 2.376664 8.734988e-03
## 1110 chr6-47455686-47456117 6.089400 5.666742e-10
## 1111 chr6-49454889-49455465 4.831832 6.764118e-07
## 1112 chr6-52155673-52156422 2.193532 1.413454e-02
## 1113 chr6-52180728-52181174 1.910452 2.803749e-02
## 1114 chr6-52251152-52251564 2.560850 5.220816e-03
## 1115 chr6-52393930-52394680 3.871559 5.407081e-05
## 1116 chr6-52497507-52498915 3.164022 7.780263e-04
## 1117 chr6-52528772-52529810 5.337980 4.699383e-08
## 1118 chr6-52535925-52537800 8.617497 3.421683e-18
## 1119 chr6-52545933-52547026 3.451267 2.789810e-04
## 1120 chr6-52551837-52552645 3.651569 1.303213e-04
## 1121 chr6-52566102-52566606 3.694571 1.101292e-04
## 1122 chr6-53460951-53462058 -2.461254 6.922623e-03
## 1123 chr6-56542055-56543203 4.031452 2.771665e-05
## 1124 chr6-56593630-56594280 2.639492 4.151521e-03
## 1125 chr6-56688993-56689369 2.400667 8.182617e-03
## 1126 chr6-56757713-56758826 3.362450 3.862703e-04
## 1127 chr6-56766806-56767192 4.656116 1.611150e-06
## 1128 chr6-63553246-63553580 3.498483 2.339563e-04
## 1129 chr6-63586700-63587234 2.083043 1.862364e-02
## 1130 chr6-70131035-70131926 5.299971 5.791052e-08
## 1131 chr6-70538416-70538701 2.198946 1.394087e-02
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## 1133 chr6-70692899-70693515 2.295257 1.085920e-02
## 1134 chr6-71443476-71443753 2.620079 4.395466e-03
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## 1136 chr6-72367464-72367720 2.488969 6.405713e-03
## 1137 chr6-72635640-72636621 4.263610 1.005753e-05
## 1138 chr6-72683562-72684107 2.306755 1.053424e-02
## 1139 chr6-72688923-72689946 3.392398 3.464188e-04
## 1140 chr6-73231584-73232396 2.000892 2.270202e-02
## 1141 chr6-73303364-73304216 2.181958 1.455632e-02
## 1142 chr6-73560100-73561335 3.179176 7.384716e-04
## 1143 chr6-73817278-73817514 2.964361 1.516561e-03
## 1144 chr6-74577516-74577963 4.842754 6.402591e-07
## 1145 chr6-74578501-74578727 3.443181 2.874572e-04
## 1146 chr6-74597865-74599063 5.706905 5.752453e-09
## 1147 chr6-74648668-74649061 2.955069 1.562993e-03
## 1148 chr6-79070211-79071207 2.763014 2.863515e-03
## 1149 chr6-79543892-79545410 2.326771 9.988731e-03
## 1150 chr6-79614067-79615103 4.448849 4.316577e-06
## 1151 chr6-82143887-82144550 2.674592 3.741011e-03
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## 1153 chr6-87572820-87573243 2.895466 1.892979e-03
## 1154 chr6-87636156-87636931 3.314689 4.587256e-04
## 1155 chr6-87656550-87657212 4.521370 3.072035e-06
## 1156 chr6-87723153-87723562 4.577534 2.352448e-06
## 1157 chr6-87904871-87905696 2.143746 1.602664e-02
## 1158 chr6-87907507-87907876 3.263957 5.493395e-04
## 1159 chr6-87908262-87908605 4.130611 1.808999e-05
## 1160 chr6-88566781-88567646 4.172519 1.506252e-05
## 1161 chr6-89205705-89206134 6.077840 6.090599e-10
## 1162 chr6-89244113-89244922 5.752846 4.387676e-09
## 1163 chr6-89304464-89304905 2.729257 3.173859e-03
## 1164 chr6-89371834-89372861 3.056806 1.118544e-03
## 1165 chr6-89375356-89375956 4.235698 1.139212e-05
## 1166 chr6-90251047-90251939 2.913458 1.787249e-03
## 1167 chr6-90315310-90316163 -2.977010 1.455372e-03
## 1168 chr6-90368679-90369465 3.661874 1.251887e-04
## 1169 chr6-90375237-90376510 -4.148131 1.676003e-05
## 1170 chr6-90382322-90383718 -2.601386 4.642397e-03
## 1171 chr6-95579231-95579569 6.852421 3.630516e-12
## 1172 chr6-98777599-98778117 4.634718 1.787120e-06
## 1173 chr6-98880478-98880802 2.190743 1.423519e-02
## 1174 chr6-99189903-99190415 2.208909 1.359049e-02
## 1175 chr6-99332908-99333437 2.177809 1.471011e-02
## 1176 chr6-100664205-100665355 4.812544 7.451067e-07
## 1177 chr6-100809321-100809684 2.479470 6.578895e-03
## 1178 chr6-101010783-101011606 2.292146 1.094860e-02
## 1179 chr6-105485383-105485833 6.916587 2.313267e-12
## 1180 chr6-105489058-105489430 3.078731 1.039421e-03
## 1181 chr6-105493340-105493776 2.424040 7.674458e-03
## 1182 chr6-105560506-105561079 3.946590 3.963599e-05
## 1183 chr6-105601406-105601987 3.421225 3.116987e-04
## 1184 chr6-105643674-105644576 5.327885 4.968137e-08
## 1185 chr6-105646328-105646773 2.472276 6.712798e-03
## 1186 chr6-105757378-105758373 8.306124 4.943943e-17
## 1187 chr6-105765286-105765545 3.331856 4.313452e-04
## 1188 chr6-105774258-105774521 2.507258 6.083598e-03
## 1189 chr6-105780352-105780727 3.226252 6.271151e-04
## 1190 chr6-105787191-105787596 4.961892 3.490491e-07
## 1191 chr6-105791291-105791941 6.461772 5.174193e-11
## 1192 chr6-105810344-105810882 3.959305 3.758408e-05
## 1193 chr6-105834829-105836138 4.915755 4.422049e-07
## 1194 chr6-105871057-105871480 3.597019 1.609428e-04
## 1195 chr6-105873485-105874202 2.836726 2.278937e-03
## 1196 chr6-105892569-105893336 5.549826 1.429769e-08
## 1197 chr6-105893755-105894051 9.210432 1.624071e-20
## 1198 chr6-105895937-105896442 10.385001 1.450837e-25
## 1199 chr6-105898206-105898536 7.799101 3.117492e-15
## 1200 chr6-105951087-105951328 2.283279 1.120697e-02
## 1201 chr6-105980696-105981794 3.958188 3.776024e-05
## 1202 chr6-106093694-106093894 4.645813 1.693700e-06
## 1203 chr6-106101711-106102273 5.771368 3.931537e-09
## 1204 chr6-106110023-106110568 5.697515 6.078313e-09
## 1205 chr6-106111666-106111941 3.512562 2.219045e-04
## 1206 chr6-106145131-106146013 3.843678 6.060212e-05
## 1207 chr6-106167090-106167819 8.994955 1.181648e-19
## 1208 chr6-106182065-106182829 3.581727 1.706650e-04
## 1209 chr6-106220468-106220951 4.720730 1.174999e-06
## 1210 chr6-106244892-106245194 4.892951 4.966768e-07
## 1211 chr6-106246085-106246424 3.707772 1.045454e-04
## 1212 chr6-106273012-106273494 3.970701 3.583068e-05
## 1213 chr6-106274200-106274468 4.955700 3.603514e-07
## 1214 chr6-107535931-107536736 2.926249 1.715381e-03
## 1215 chr6-108541758-108542829 2.941988 1.630565e-03
## 1216 chr6-108560392-108560986 4.486856 3.614091e-06
## 1217 chr6-108592306-108592942 2.669975 3.792842e-03
## 1218 chr6-108594261-108594548 3.490074 2.414437e-04
## 1219 chr6-108618643-108619745 2.246040 1.235072e-02
## 1220 chr6-108669738-108670064 3.800446 7.221790e-05
## 1221 chr6-108673028-108673706 9.612639 3.535635e-22
## 1222 chr6-108733397-108734057 6.548101 2.913660e-11
## 1223 chr6-108755237-108756141 8.000904 6.175463e-16
## 1224 chr6-108767410-108767916 2.589021 4.812459e-03
## 1225 chr6-108865741-108866219 4.457930 4.137737e-06
## 1226 chr6-108874246-108875403 3.971434 3.572063e-05
## 1227 chr6-108882948-108883614 2.850044 2.185658e-03
## 1228 chr6-108904486-108905119 4.559629 2.562198e-06
## 1229 chr6-109083493-109083995 5.244447 7.837578e-08
## 1230 chr6-109460623-109460936 2.827050 2.348948e-03
## 1231 chr6-110539614-110539923 2.649684 4.028355e-03
## 1232 chr6-111338723-111339181 5.356447 4.243724e-08
## 1233 chr6-113755341-113756345 4.518991 3.106749e-06
## 1234 chr6-116059565-116061050 3.786865 7.628002e-05
## 1235 chr6-116087318-116088145 3.684426 1.146092e-04
## 1236 chr6-118485549-118485934 3.838325 6.193828e-05
## 1237 chr6-119172186-119172582 2.257181 1.199839e-02
## 1238 chr6-119347851-119348573 3.063205 1.094901e-03
## 1239 chr6-119369968-119370430 3.190638 7.097940e-04
## 1240 chr6-119442481-119443282 1.798908 3.601666e-02
## 1241 chr6-119459246-119459967 3.214996 6.522318e-04
## 1242 chr6-119462956-119463615 1.867747 3.089865e-02
## 1243 chr6-119501982-119502426 3.197065 6.941688e-04
## 1244 chr6-119586323-119586883 4.537666 2.844010e-06
## 1245 chr6-119748970-119749648 2.314453 1.032144e-02
## 1246 chr6-125354600-125354960 5.757441 4.269932e-09
## 1247 chr6-125356823-125357883 5.180596 1.105889e-07
## 1248 chr6-125597247-125598664 3.177923 7.416699e-04
## 1249 chr6-125714319-125715062 4.769432 9.237310e-07
## 1250 chr6-125817995-125818652 2.672470 3.764760e-03
## 1251 chr6-125910493-125910868 3.123403 8.938652e-04
## 1252 chr6-129448926-129449319 2.738183 3.088981e-03
## 1253 chr6-129646665-129646978 2.524859 5.787242e-03
## 1254 chr6-129860477-129861396 2.144901 1.598039e-02
## 1255 chr6-130270040-130270631 3.186463 7.201207e-04
## 1256 chr6-130517318-130517678 2.899989 1.865876e-03
## 1257 chr6-130776311-130776875 3.662255 1.250022e-04
## 1258 chr6-130840109-130840363 2.534106 5.636731e-03
## 1259 chr6-130859330-130859876 5.595272 1.101378e-08
## 1260 chr6-130865750-130866161 2.946782 1.605497e-03
## 1261 chr6-131029353-131030197 3.077964 1.042099e-03
## 1262 chr6-131510044-131510531 6.437375 6.077863e-11
## 1263 chr6-131946001-131946675 3.350460 4.033874e-04
## 1264 chr6-132456506-132457141 3.262524 5.521246e-04
## 1265 chr6-134079202-134080736 2.199546 1.391956e-02
## 1266 chr6-134827261-134828653 4.146929 1.684822e-05
## 1267 chr6-134870574-134871643 5.899988 1.817640e-09
## 1268 chr6-135014056-135014995 3.525237 2.115519e-04
## 1269 chr6-135102729-135103253 1.833702 3.334914e-02
## 1270 chr6-135226470-135226916 7.288811 1.563512e-13
## 1271 chr6-136717248-136717759 3.241213 5.951106e-04
## 1272 chr6-136767378-136767799 3.138340 8.495374e-04
## 1273 chr6-139172323-139172899 4.046938 2.594599e-05
## 1274 chr6-139257848-139258382 8.243618 8.354010e-17
## 1275 chr6-139580448-139580953 4.513144 3.193681e-06
## 1276 chr6-139736375-139736904 2.349489 9.399595e-03
## 1277 chr6-139764435-139765000 3.163280 7.800107e-04
## 1278 chr6-141463630-141463948 4.269495 9.795802e-06
## 1279 chr6-141464405-141464890 2.973860 1.470396e-03
## 1280 chr6-143059643-143061944 3.246016 5.851604e-04
## 1281 chr6-143615703-143616115 2.968599 1.495803e-03
## 1282 chr6-143901780-143902532 5.057410 2.124943e-07
## 1283 chr6-144156237-144156738 1.976161 2.406825e-02
## 1284 chr6-144284607-144287259 4.491808 3.531048e-06
## 1285 chr6-144305632-144306294 2.734512 3.123638e-03
## 1286 chr6-144341504-144342199 2.001868 2.264949e-02
## 1287 chr6-144353938-144354282 5.163123 1.214318e-07
## 1288 chr6-144715074-144715614 2.817432 2.420466e-03
## 1289 chr6-145621485-145622161 2.302994 1.063960e-02
## 1290 chr6-149187548-149187845 2.364726 9.021706e-03
## 1291 chr6-149217336-149217923 2.219277 1.323394e-02
## 1292 chr6-149239627-149240205 5.700064 5.988138e-09
## 1293 chr6-149651012-149651319 2.473898 6.682383e-03
## 1294 chr6-151681099-151682125 3.734556 9.402340e-05
## 1295 chr6-151689976-151691724 2.174469 1.483497e-02
## 1296 chr6-151700815-151703594 2.134178 1.641409e-02
## 1297 chr6-151757115-151758392 6.821483 4.505282e-12
## 1298 chr6-151822242-151822950 2.356237 9.230559e-03
## 1299 chr6-151905069-151905377 2.815289 2.436668e-03
## 1300 chr6-152117588-152118063 3.410084 3.247147e-04
## 1301 chr6-154161716-154161989 4.826034 6.963936e-07
## 1302 chr6-154685796-154686535 -2.278520 1.134781e-02
## 1303 chr6-155260572-155261069 3.688679 1.127108e-04
## 1304 chr6-156278954-156280594 2.722993 3.234667e-03
## 1305 chr6-156394807-156397113 7.915989 1.226474e-15
## 1306 chr6-156441904-156442252 2.278943 1.133523e-02
## 1307 chr6-156857272-156857919 7.236628 2.299891e-13
## 1308 chr6-157203252-157203791 6.337748 1.165742e-10
## 1309 chr6-157401696-157402499 3.897508 4.859389e-05
## 1310 chr6-157570678-157571841 2.295113 1.086332e-02
## 1311 chr6-157577410-157578043 3.038433 1.189061e-03
## 1312 chr6-157585163-157585814 4.621274 1.906955e-06
## 1313 chr6-157800441-157801349 3.909757 4.619451e-05
## 1314 chr6-157879474-157880210 3.152609 8.090908e-04
## 1315 chr6-157887932-157888210 4.388284 5.712413e-06
## 1316 chr6-158791666-158792341 2.582962 4.897811e-03
## 1317 chr6-159019077-159020401 3.050319 1.142994e-03
## 1318 chr6-159033182-159033943 3.531555 2.065620e-04
## 1319 chr6-159116053-159117902 -3.248885 5.792920e-04
## 1320 chr6-163637314-163637828 4.830789 6.799645e-07
## 1321 chr6-163738659-163739044 2.583717 4.887101e-03
## 1322 chr6-166088355-166088722 3.798858 7.268213e-05
## 1323 chr6-166109583-166109928 2.616320 4.444155e-03
## 1324 chr6-166325290-166325922 2.959345 1.541467e-03
## 1325 chr6-166381629-166383942 2.755298 2.931931e-03
## 1326 chr6-166419096-166419838 7.103870 6.065549e-13
## 1327 chr6-166631014-166631305 5.194955 1.023846e-07
## 1328 chr6-169473248-169474190 6.727766 8.614401e-12
## 1329 chr6-169544449-169544815 2.989007 1.399427e-03
## 1330 chr6-169555915-169557510 4.391738 5.622401e-06
## 1331 chr6-169568347-169569019 4.215734 1.244834e-05
## 1332 chr6-169606796-169607241 3.051761 1.137516e-03
## 1333 chr6-170438304-170438835 4.769812 9.219898e-07
coverage_extend <- function(x,y,seuratobject){purrr::map(y, function(y) {
p <- CoveragePlot(
object = seuratobject,
region = x,
features = x,
expression.assay = "RNA",
idents = idents.plot,
extend.upstream = y,
extend.downstream = y
#tile = TRUE
)
p
})}
## more recent data from internet
ensembl <- useMart(biomart = "ensembl",dataset="hsapiens_gene_ensembl")
ensembl
## Object of class 'Mart':
## Using the ENSEMBL_MART_ENSEMBL BioMart database
## Using the hsapiens_gene_ensembl dataset
Datasets <- listDatasets(ensembl)
Datasets[grep("hsapiens_gene_ensembl",Datasets$dataset),] ## hg38 version!!!!!!!!
## dataset description version
## 80 hsapiens_gene_ensembl Human genes (GRCh38.p13) GRCh38.p13
hg38.gene.annot <- getBM(attributes = c("ensembl_gene_id","entrezgene_id","hgnc_symbol",
"chromosome_name","start_position","end_position",
"strand","band","gene_biotype"
),
mart = ensembl
)
table(hg38.gene.annot$chromosome_name,exclude=NULL)
##
## 1 10
## 5577 2384
## 11 12
## 3407 3099
## 13 14
## 1425 2320
## 15 16
## 2258 2609
## 17 18
## 3104 1256
## 19 2
## 3030 4282
## 20 21
## 1482 899
## 22 3
## 1411 3257
## 4 5
## 2707 3042
## 6 7
## 3137 3068
## 8 9
## 2536 2366
## CHR_HG1_PATCH CHR_HG107_PATCH
## 58 4
## CHR_HG109_PATCH CHR_HG126_PATCH
## 34 5
## CHR_HG1277_PATCH CHR_HG1298_PATCH
## 10 3
## CHR_HG1309_PATCH CHR_HG1311_PATCH
## 11 8
## CHR_HG1320_PATCH CHR_HG1342_HG2282_PATCH
## 3 32
## CHR_HG1362_PATCH CHR_HG1384_PATCH
## 16 2
## CHR_HG1395_PATCH CHR_HG1398_PATCH
## 8 11
## CHR_HG142_HG150_NOVEL_TEST CHR_HG1445_PATCH
## 16 5
## CHR_HG1485_PATCH CHR_HG151_NOVEL_TEST
## 7 11
## CHR_HG1524_PATCH CHR_HG1531_PATCH
## 3 1
## CHR_HG1535_PATCH CHR_HG1651_PATCH
## 8 1
## CHR_HG1708_PATCH CHR_HG1815_PATCH
## 3 26
## CHR_HG1832_PATCH CHR_HG2002_PATCH
## 9 22
## CHR_HG2021_PATCH CHR_HG2022_PATCH
## 14 2
## CHR_HG2023_PATCH CHR_HG2030_PATCH
## 25 23
## CHR_HG2046_PATCH CHR_HG2047_PATCH
## 19 2
## CHR_HG2057_PATCH CHR_HG2058_PATCH
## 10 9
## CHR_HG2060_PATCH CHR_HG2062_PATCH
## 4 1
## CHR_HG2063_PATCH CHR_HG2066_PATCH
## 3 22
## CHR_HG2067_PATCH CHR_HG2072_PATCH
## 2 6
## CHR_HG2087_PATCH CHR_HG2088_PATCH
## 17 2
## CHR_HG2095_PATCH CHR_HG2104_PATCH
## 9 4
## CHR_HG2111_PATCH CHR_HG2114_PATCH
## 8 15
## CHR_HG2115_PATCH CHR_HG2116_PATCH
## 9 2
## CHR_HG2121_PATCH CHR_HG2128_PATCH
## 8 2
## CHR_HG2133_PATCH CHR_HG2191_PATCH
## 3 6
## CHR_HG2198_PATCH CHR_HG2213_PATCH
## 20 6
## CHR_HG2217_PATCH CHR_HG2232_PATCH
## 17 9
## CHR_HG2233_PATCH CHR_HG2235_PATCH
## 2 4
## CHR_HG2236_PATCH CHR_HG2239_PATCH
## 5 1
## CHR_HG2246_HG2248_HG2276_PATCH CHR_HG2247_PATCH
## 20 3
## CHR_HG2249_PATCH CHR_HG2263_PATCH
## 2 11
## CHR_HG2266_PATCH CHR_HG2285_HG106_HG2252_PATCH
## 10 9
## CHR_HG2288_HG2289_PATCH CHR_HG2290_PATCH
## 3 41
## CHR_HG2291_PATCH CHR_HG2334_PATCH
## 9 9
## CHR_HG2365_PATCH CHR_HG2412_PATCH
## 60 6
## CHR_HG2419_PATCH CHR_HG2442_PATCH
## 18 3
## CHR_HG2471_PATCH CHR_HG2499_PATCH
## 4 14
## CHR_HG2509_PATCH CHR_HG2510_PATCH
## 3 3
## CHR_HG2511_PATCH CHR_HG2512_PATCH
## 3 2
## CHR_HG2513_PATCH CHR_HG2525_PATCH
## 19 9
## CHR_HG26_PATCH CHR_HG28_PATCH
## 28 18
## CHR_HG30_PATCH CHR_HG439_PATCH
## 29 15
## CHR_HG545_PATCH CHR_HG699_PATCH
## 14 3
## CHR_HG705_PATCH CHR_HG708_PATCH
## 3 23
## CHR_HG721_PATCH CHR_HG76_PATCH
## 3 216
## CHR_HG926_PATCH CHR_HG986_PATCH
## 20 6
## CHR_HSCHR1_1_CTG11 CHR_HSCHR1_1_CTG3
## 3 14
## CHR_HSCHR1_1_CTG31 CHR_HSCHR1_1_CTG32_1
## 14 1
## CHR_HSCHR1_2_CTG3 CHR_HSCHR1_2_CTG31
## 19 10
## CHR_HSCHR1_2_CTG32_1 CHR_HSCHR1_3_CTG3
## 7 1
## CHR_HSCHR1_3_CTG31 CHR_HSCHR1_3_CTG32_1
## 5 9
## CHR_HSCHR1_4_CTG3 CHR_HSCHR1_4_CTG31
## 15 8
## CHR_HSCHR1_5_CTG3 CHR_HSCHR1_5_CTG32_1
## 19 14
## CHR_HSCHR1_6_CTG3 CHR_HSCHR1_8_CTG3
## 8 6
## CHR_HSCHR1_9_CTG3 CHR_HSCHR1_ALT2_1_CTG32_1
## 2 9
## CHR_HSCHR10_1_CTG1 CHR_HSCHR10_1_CTG2
## 7 10
## CHR_HSCHR10_1_CTG3 CHR_HSCHR10_1_CTG4
## 4 7
## CHR_HSCHR10_1_CTG6 CHR_HSCHR11_1_CTG1_2
## 1 11
## CHR_HSCHR11_1_CTG3_1 CHR_HSCHR11_1_CTG5
## 7 9
## CHR_HSCHR11_1_CTG6 CHR_HSCHR11_1_CTG7
## 12 15
## CHR_HSCHR11_1_CTG8 CHR_HSCHR11_2_CTG1
## 16 3
## CHR_HSCHR11_2_CTG1_1 CHR_HSCHR11_2_CTG8
## 13 9
## CHR_HSCHR11_3_CTG1 CHR_HSCHR12_1_CTG1
## 5 9
## CHR_HSCHR12_1_CTG2_1 CHR_HSCHR12_2_CTG2
## 6 29
## CHR_HSCHR12_2_CTG2_1 CHR_HSCHR12_3_CTG2
## 3 35
## CHR_HSCHR12_3_CTG2_1 CHR_HSCHR12_4_CTG2
## 4 7
## CHR_HSCHR12_4_CTG2_1 CHR_HSCHR12_5_CTG2
## 3 2
## CHR_HSCHR12_5_CTG2_1 CHR_HSCHR12_6_CTG2_1
## 3 3
## CHR_HSCHR12_8_CTG2_1 CHR_HSCHR12_9_CTG2_1
## 1 4
## CHR_HSCHR13_1_CTG1 CHR_HSCHR13_1_CTG3
## 5 9
## CHR_HSCHR13_1_CTG5 CHR_HSCHR14_1_CTG1
## 3 9
## CHR_HSCHR14_2_CTG1 CHR_HSCHR14_3_CTG1
## 3 187
## CHR_HSCHR14_7_CTG1 CHR_HSCHR14_8_CTG1
## 37 6
## CHR_HSCHR14_9_CTG1 CHR_HSCHR15_1_CTG1
## 1 21
## CHR_HSCHR15_1_CTG3 CHR_HSCHR15_1_CTG8
## 10 24
## CHR_HSCHR15_2_CTG3 CHR_HSCHR15_2_CTG8
## 10 3
## CHR_HSCHR15_3_CTG3 CHR_HSCHR15_3_CTG8
## 11 8
## CHR_HSCHR15_4_CTG8 CHR_HSCHR15_5_CTG8
## 74 19
## CHR_HSCHR15_6_CTG8 CHR_HSCHR16_1_CTG1
## 42 56
## CHR_HSCHR16_1_CTG3_1 CHR_HSCHR16_2_CTG3_1
## 4 4
## CHR_HSCHR16_3_CTG1 CHR_HSCHR16_4_CTG1
## 14 4
## CHR_HSCHR16_4_CTG3_1 CHR_HSCHR16_5_CTG1
## 5 7
## CHR_HSCHR16_5_CTG3_1 CHR_HSCHR16_CTG2
## 7 7
## CHR_HSCHR17_1_CTG1 CHR_HSCHR17_1_CTG2
## 11 10
## CHR_HSCHR17_1_CTG4 CHR_HSCHR17_1_CTG5
## 12 43
## CHR_HSCHR17_1_CTG9 CHR_HSCHR17_10_CTG4
## 4 28
## CHR_HSCHR17_11_CTG4 CHR_HSCHR17_12_CTG4
## 1 1
## CHR_HSCHR17_2_CTG1 CHR_HSCHR17_2_CTG2
## 5 8
## CHR_HSCHR17_2_CTG4 CHR_HSCHR17_2_CTG5
## 1 47
## CHR_HSCHR17_3_CTG1 CHR_HSCHR17_3_CTG2
## 26 4
## CHR_HSCHR17_3_CTG4 CHR_HSCHR17_4_CTG4
## 3 26
## CHR_HSCHR17_5_CTG4 CHR_HSCHR17_6_CTG4
## 8 9
## CHR_HSCHR17_7_CTG4 CHR_HSCHR17_8_CTG4
## 110 2
## CHR_HSCHR17_9_CTG4 CHR_HSCHR18_1_CTG1
## 2 2
## CHR_HSCHR18_1_CTG1_1 CHR_HSCHR18_1_CTG2_1
## 6 2
## CHR_HSCHR18_2_CTG1_1 CHR_HSCHR18_2_CTG2
## 1 5
## CHR_HSCHR18_2_CTG2_1 CHR_HSCHR18_3_CTG2_1
## 3 6
## CHR_HSCHR18_5_CTG1_1 CHR_HSCHR18_ALT2_CTG2_1
## 2 4
## CHR_HSCHR18_ALT21_CTG2_1 CHR_HSCHR19_1_CTG2
## 2 11
## CHR_HSCHR19_1_CTG3_1 CHR_HSCHR19_2_CTG2
## 3 9
## CHR_HSCHR19_2_CTG3_1 CHR_HSCHR19_3_CTG2
## 3 11
## CHR_HSCHR19_3_CTG3_1 CHR_HSCHR19_4_CTG2
## 15 1
## CHR_HSCHR19_4_CTG3_1 CHR_HSCHR19_5_CTG2
## 78 6
## CHR_HSCHR19KIR_0010-5217-AB_CTG3_1 CHR_HSCHR19KIR_0019-4656-A_CTG3_1
## 9 12
## CHR_HSCHR19KIR_0019-4656-B_CTG3_1 CHR_HSCHR19KIR_502960008-1_CTG3_1
## 15 13
## CHR_HSCHR19KIR_502960008-2_CTG3_1 CHR_HSCHR19KIR_7191059-1_CTG3_1
## 13 13
## CHR_HSCHR19KIR_7191059-2_CTG3_1 CHR_HSCHR19KIR_ABC08_A1_HAP_CTG3_1
## 14 12
## CHR_HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1 CHR_HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1
## 10 13
## CHR_HSCHR19KIR_CA01-TA01_1_CTG3_1 CHR_HSCHR19KIR_CA01-TA01_2_CTG3_1
## 13 13
## CHR_HSCHR19KIR_CA01-TB01_CTG3_1 CHR_HSCHR19KIR_CA01-TB04_CTG3_1
## 17 20
## CHR_HSCHR19KIR_CA04_CTG3_1 CHR_HSCHR19KIR_FH05_A_HAP_CTG3_1
## 8 12
## CHR_HSCHR19KIR_FH05_B_HAP_CTG3_1 CHR_HSCHR19KIR_FH06_A_HAP_CTG3_1
## 17 12
## CHR_HSCHR19KIR_FH06_BA1_HAP_CTG3_1 CHR_HSCHR19KIR_FH08_A_HAP_CTG3_1
## 12 12
## CHR_HSCHR19KIR_FH08_BAX_HAP_CTG3_1 CHR_HSCHR19KIR_FH13_A_HAP_CTG3_1
## 15 13
## CHR_HSCHR19KIR_FH13_BA2_HAP_CTG3_1 CHR_HSCHR19KIR_FH15_A_HAP_CTG3_1
## 15 13
## CHR_HSCHR19KIR_FH15_B_HAP_CTG3_1 CHR_HSCHR19KIR_G085_A_HAP_CTG3_1
## 18 12
## CHR_HSCHR19KIR_G085_BA1_HAP_CTG3_1 CHR_HSCHR19KIR_G248_A_HAP_CTG3_1
## 12 13
## CHR_HSCHR19KIR_G248_BA2_HAP_CTG3_1 CHR_HSCHR19KIR_GRC212_AB_HAP_CTG3_1
## 11 13
## CHR_HSCHR19KIR_GRC212_BA1_HAP_CTG3_1 CHR_HSCHR19KIR_HG2393_CTG3_1
## 9 10
## CHR_HSCHR19KIR_HG2394_CTG3_1 CHR_HSCHR19KIR_HG2396_CTG3_1
## 13 9
## CHR_HSCHR19KIR_LUCE_A_HAP_CTG3_1 CHR_HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1
## 10 14
## CHR_HSCHR19KIR_RP5_B_HAP_CTG3_1 CHR_HSCHR19KIR_RSH_A_HAP_CTG3_1
## 12 13
## CHR_HSCHR19KIR_RSH_BA2_HAP_CTG3_1 CHR_HSCHR19KIR_T7526_A_HAP_CTG3_1
## 13 13
## CHR_HSCHR19KIR_T7526_BDEL_HAP_CTG3_1 CHR_HSCHR19LRC_COX1_CTG3_1
## 13 48
## CHR_HSCHR19LRC_COX2_CTG3_1 CHR_HSCHR19LRC_LRC_I_CTG3_1
## 31 23
## CHR_HSCHR19LRC_LRC_J_CTG3_1 CHR_HSCHR19LRC_LRC_S_CTG3_1
## 21 20
## CHR_HSCHR19LRC_LRC_T_CTG3_1 CHR_HSCHR19LRC_PGF1_CTG3_1
## 23 53
## CHR_HSCHR19LRC_PGF2_CTG3_1 CHR_HSCHR2_1_CTG1
## 35 4
## CHR_HSCHR2_1_CTG15 CHR_HSCHR2_1_CTG5
## 5 3
## CHR_HSCHR2_1_CTG7 CHR_HSCHR2_1_CTG7_2
## 4 4
## CHR_HSCHR2_2_CTG1 CHR_HSCHR2_2_CTG15
## 3 5
## CHR_HSCHR2_2_CTG7 CHR_HSCHR2_2_CTG7_2
## 7 1
## CHR_HSCHR2_3_CTG1 CHR_HSCHR2_3_CTG15
## 1 9
## CHR_HSCHR2_3_CTG7_2 CHR_HSCHR2_4_CTG1
## 3 3
## CHR_HSCHR2_6_CTG7_2 CHR_HSCHR2_7_CTG7_2
## 24 2
## CHR_HSCHR2_8_CTG7_2 CHR_HSCHR20_1_CTG1
## 8 3
## CHR_HSCHR20_1_CTG2 CHR_HSCHR20_1_CTG3
## 2 6
## CHR_HSCHR20_1_CTG4 CHR_HSCHR21_2_CTG1_1
## 3 5
## CHR_HSCHR21_3_CTG1_1 CHR_HSCHR21_4_CTG1_1
## 4 6
## CHR_HSCHR21_5_CTG2 CHR_HSCHR21_6_CTG1_1
## 5 5
## CHR_HSCHR21_8_CTG1_1 CHR_HSCHR22_1_CTG1
## 2 8
## CHR_HSCHR22_1_CTG2 CHR_HSCHR22_1_CTG3
## 5 24
## CHR_HSCHR22_1_CTG4 CHR_HSCHR22_1_CTG5
## 4 4
## CHR_HSCHR22_1_CTG6 CHR_HSCHR22_1_CTG7
## 7 35
## CHR_HSCHR22_2_CTG1 CHR_HSCHR22_3_CTG1
## 11 13
## CHR_HSCHR22_4_CTG1 CHR_HSCHR22_5_CTG1
## 8 8
## CHR_HSCHR22_6_CTG1 CHR_HSCHR22_7_CTG1
## 6 10
## CHR_HSCHR22_8_CTG1 CHR_HSCHR3_1_CTG1
## 9 8
## CHR_HSCHR3_1_CTG2_1 CHR_HSCHR3_1_CTG3
## 3 7
## CHR_HSCHR3_2_CTG2_1 CHR_HSCHR3_2_CTG3
## 3 4
## CHR_HSCHR3_3_CTG1 CHR_HSCHR3_3_CTG3
## 1 6
## CHR_HSCHR3_4_CTG1 CHR_HSCHR3_4_CTG2_1
## 3 7
## CHR_HSCHR3_4_CTG3 CHR_HSCHR3_5_CTG1
## 6 12
## CHR_HSCHR3_5_CTG2_1 CHR_HSCHR3_5_CTG3
## 2 7
## CHR_HSCHR3_6_CTG2_1 CHR_HSCHR3_6_CTG3
## 5 6
## CHR_HSCHR3_7_CTG3 CHR_HSCHR3_8_CTG2_1
## 6 3
## CHR_HSCHR3_8_CTG3 CHR_HSCHR3_9_CTG2_1
## 6 4
## CHR_HSCHR3_9_CTG3 CHR_HSCHR4_1_CTG12
## 10 3
## CHR_HSCHR4_1_CTG4 CHR_HSCHR4_1_CTG6
## 4 1
## CHR_HSCHR4_1_CTG9 CHR_HSCHR4_11_CTG12
## 22 23
## CHR_HSCHR4_12_CTG12 CHR_HSCHR4_2_CTG12
## 5 1
## CHR_HSCHR4_2_CTG4 CHR_HSCHR4_3_CTG12
## 1 4
## CHR_HSCHR4_4_CTG12 CHR_HSCHR4_5_CTG12
## 1 3
## CHR_HSCHR4_6_CTG12 CHR_HSCHR4_7_CTG12
## 13 6
## CHR_HSCHR4_8_CTG12 CHR_HSCHR4_9_CTG12
## 2 6
## CHR_HSCHR5_1_CTG1 CHR_HSCHR5_1_CTG1_1
## 1 27
## CHR_HSCHR5_1_CTG5 CHR_HSCHR5_2_CTG1
## 2 4
## CHR_HSCHR5_2_CTG1_1 CHR_HSCHR5_2_CTG5
## 52 7
## CHR_HSCHR5_3_CTG1 CHR_HSCHR5_3_CTG5
## 6 7
## CHR_HSCHR5_4_CTG1 CHR_HSCHR5_4_CTG1_1
## 4 3
## CHR_HSCHR5_5_CTG1 CHR_HSCHR5_6_CTG1
## 4 4
## CHR_HSCHR5_7_CTG1 CHR_HSCHR5_8_CTG1
## 1 10
## CHR_HSCHR6_1_CTG2 CHR_HSCHR6_1_CTG3
## 5 1
## CHR_HSCHR6_1_CTG4 CHR_HSCHR6_1_CTG5
## 8 7
## CHR_HSCHR6_1_CTG6 CHR_HSCHR6_1_CTG7
## 1 2
## CHR_HSCHR6_1_CTG8 CHR_HSCHR6_1_CTG9
## 9 4
## CHR_HSCHR6_8_CTG1 CHR_HSCHR6_MHC_APD_CTG1
## 2 184
## CHR_HSCHR6_MHC_COX_CTG1 CHR_HSCHR6_MHC_DBB_CTG1
## 341 319
## CHR_HSCHR6_MHC_MANN_CTG1 CHR_HSCHR6_MHC_MCF_CTG1
## 299 293
## CHR_HSCHR6_MHC_QBL_CTG1 CHR_HSCHR6_MHC_SSTO_CTG1
## 324 303
## CHR_HSCHR7_1_CTG1 CHR_HSCHR7_1_CTG4_4
## 8 7
## CHR_HSCHR7_1_CTG6 CHR_HSCHR7_1_CTG7
## 7 1
## CHR_HSCHR7_2_CTG1 CHR_HSCHR7_2_CTG4_4
## 10 8
## CHR_HSCHR7_2_CTG6 CHR_HSCHR7_2_CTG7
## 109 1
## CHR_HSCHR7_3_CTG1 CHR_HSCHR7_3_CTG4_4
## 3 22
## CHR_HSCHR7_3_CTG6 CHR_HSCHR8_1_CTG1
## 5 6
## CHR_HSCHR8_1_CTG6 CHR_HSCHR8_1_CTG7
## 5 2
## CHR_HSCHR8_2_CTG1 CHR_HSCHR8_2_CTG7
## 3 4
## CHR_HSCHR8_3_CTG1 CHR_HSCHR8_3_CTG7
## 25 24
## CHR_HSCHR8_4_CTG1 CHR_HSCHR8_4_CTG7
## 4 7
## CHR_HSCHR8_5_CTG1 CHR_HSCHR8_5_CTG7
## 2 8
## CHR_HSCHR8_6_CTG1 CHR_HSCHR8_7_CTG1
## 2 6
## CHR_HSCHR8_7_CTG7 CHR_HSCHR8_8_CTG1
## 2 16
## CHR_HSCHR8_9_CTG1 CHR_HSCHR9_1_CTG1
## 9 1
## CHR_HSCHR9_1_CTG2 CHR_HSCHR9_1_CTG3
## 3 4
## CHR_HSCHR9_1_CTG4 CHR_HSCHR9_1_CTG5
## 2 9
## CHR_HSCHR9_1_CTG6 CHR_HSCHRX_1_CTG3
## 2 7
## CHR_HSCHRX_2_CTG12 CHR_HSCHRX_2_CTG3
## 1 5
## GL000009.2 GL000194.1
## 1 2
## GL000195.1 GL000205.2
## 2 1
## GL000213.1 GL000216.2
## 2 1
## GL000218.1 GL000219.1
## 1 1
## GL000220.1 GL000225.1
## 4 1
## KI270442.1 KI270711.1
## 2 1
## KI270713.1 KI270721.1
## 4 4
## KI270726.1 KI270727.1
## 2 7
## KI270728.1 KI270731.1
## 6 2
## KI270733.1 KI270734.1
## 4 4
## KI270744.1 KI270750.1
## 1 1
## MT X
## 37 2471
## Y
## 526
table(hg38.gene.annot$strand,exclude=NULL)
##
## -1 1
## 33559 34790
## remove MT, sexual chromosomes and random chr. Arrange also strand info.
hg38.gene.annot <- hg38.gene.annot[which(hg38.gene.annot$chromosome_name %in% paste0(1:22)),]
hg38.gene.annot$chromosome_name <- paste0("chr",hg38.gene.annot$chromosome_name)
hg38.gene.annot$strand[which(hg38.gene.annot$strand==1)] <- "+"
hg38.gene.annot$strand[which(hg38.gene.annot$strand=="-1")] <- "-"
table(hg38.gene.annot$chromosome_name,exclude=NULL)
##
## chr1 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr2 chr20
## 5577 2384 3407 3099 1425 2320 2258 2609 3104 1256 3030 4282 1482
## chr21 chr22 chr3 chr4 chr5 chr6 chr7 chr8 chr9
## 899 1411 3257 2707 3042 3137 3068 2536 2366
table(hg38.gene.annot$strand,exclude=NULL)
##
## - +
## 28891 29765
head(hg38.gene.annot);dim(hg38.gene.annot)
## ensembl_gene_id entrezgene_id hgnc_symbol chromosome_name start_position
## 6802 ENSG00000158270 81035 COLEC12 chr18 316737
## 6809 ENSG00000264964 NA TWSG1-DT chr18 9310522
## 6810 ENSG00000265514 105371969 LINC01892 chr18 5081171
## 6812 ENSG00000266441 NA ARHGAP28-AS1 chr18 6728821
## 6813 ENSG00000287065 NA chr18 10297299
## 6814 ENSG00000265316 NA chr18 5463627
## end_position strand band gene_biotype
## 6802 500722 - p11.32 protein_coding
## 6809 9334445 - p11.22 lncRNA
## 6810 5098780 + p11.31 lncRNA
## 6812 6729862 - p11.31 lncRNA
## 6813 10323565 + p11.22 lncRNA
## 6814 5480975 + p11.31 lncRNA
## [1] 58656 9
##polish gene annotation
any(is.na(hg38.gene.annot$ensembl_gene_id))
## [1] FALSE
any(hg38.gene.annot$ensembl_gene_id=="")
## [1] FALSE
any(is.na(hg38.gene.annot$entrezgene_id))
## [1] TRUE
any(na.omit(hg38.gene.annot$entrezgene_id)=="")
## [1] FALSE
any(is.na(hg38.gene.annot$hgnc_symbol))
## [1] FALSE
any(hg38.gene.annot$hgnc_symbol=="")
## [1] TRUE
hg38.gene.annot$hgnc_symbol[which(hg38.gene.annot$hgnc_symbol=="")] <- NA
##make GRange object
hg38.gene.annot.GR <- GRanges(seqnames = hg38.gene.annot$chromosome_name,
ranges = IRanges(hg38.gene.annot$start_position,end = hg38.gene.annot$end_position),
strand = hg38.gene.annot$strand
)
mcols(hg38.gene.annot.GR) <- hg38.gene.annot[,grep("^chromosome_name$|^start_position$|^end_position|^strand$$",colnames(hg38.gene.annot),value = T,invert = T)]
hg38.gene.annot.GR <- sort(sortSeqlevels(hg38.gene.annot.GR))
hg38.gene.annot.GR
## GRanges object with 58656 ranges and 5 metadata columns:
## seqnames ranges strand | ensembl_gene_id entrezgene_id
## <Rle> <IRanges> <Rle> | <character> <integer>
## [1] chr1 11869-14409 + | ENSG00000223972 102725121
## [2] chr1 11869-14409 + | ENSG00000223972 100287596
## [3] chr1 11869-14409 + | ENSG00000223972 100287102
## [4] chr1 11869-14409 + | ENSG00000223972 727856
## [5] chr1 11869-14409 + | ENSG00000223972 84771
## ... ... ... ... . ... ...
## [58652] chr22 50691260-50691363 - | ENSG00000206841 <NA>
## [58653] chr22 50735825-50738139 - | ENSG00000225929 105373100
## [58654] chr22 50740593-50743520 - | ENSG00000254499 <NA>
## [58655] chr22 50754675-50755434 - | ENSG00000213683 <NA>
## [58656] chr22 50767501-50783667 - | ENSG00000079974 11158
## hgnc_symbol band gene_biotype
## <character> <character> <character>
## [1] DDX11L1 p36.33 transcribed_unproces..
## [2] DDX11L1 p36.33 transcribed_unproces..
## [3] DDX11L1 p36.33 transcribed_unproces..
## [4] DDX11L1 p36.33 transcribed_unproces..
## [5] DDX11L1 p36.33 transcribed_unproces..
## ... ... ... ...
## [58652] RNU6-409P q13.33 snRNA
## [58653] <NA> q13.33 lncRNA
## [58654] <NA> q13.33 lncRNA
## [58655] <NA> q13.33 processed_pseudogene
## [58656] RABL2B q13.33 protein_coding
## -------
## seqinfo: 22 sequences from an unspecified genome; no seqlengths
## Extend 2,000bps upstream of promoters
hg38.gene.annot.2000.GR <- punion(promoters(x = hg38.gene.annot.GR,upstream = 2000,downstream = 0),
hg38.gene.annot.GR
)
#saveRDS(hg38.gene.annot.GR, "~/Documents/multiome_tonsil_Lucia/results/R_objects/14-hg38.gene.annot.GR.rds")
#saveRDS(hg38.gene.annot.2000.GR, "~/Documents/multiome_tonsil_Lucia/results/R_objects/14-hg38.gene.annot.2000.GR.rds")
## add metadata of the genes names
values(hg38.gene.annot.GR) <- DataFrame(hgnc_symbol = hg38.gene.annot$hgnc_symbol)
DT::datatable(tonsil_DARs)
## Warning in instance$preRenderHook(instance): It seems your data is too big
## for client-side DataTables. You may consider server-side processing: https://
## rstudio.github.io/DT/server.html
kbl(head(df_link_DARs_DEA),caption = "Table of the join of the all links peaks and the DARs") %>%
kable_paper("striped", full_width = F)
| seqnames | start | end | width | strand | score | gene | peak | zscore | pvalue | p_val.dars | avg_log2FC.dars | pct.1.dars | pct.2.dars | p_val_adj.dars | cluster | start.peak | end.peak | p_val.rna | avg_log2FC.rna | pct.1.rna | pct.2.rna | p_val_adj.rna | p_val_adj.y |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr3 | 1381223 | 187745727 | 186364505 |
|
0.1209302 | BCL6 | chr3-1380485-1381960 | 1.959346 | 0.0250361 | 0 | 0.2983296 | 0.176 | 0.069 | 0 | GC/LZ | 1380485 | 1381960 | BCL61 | 0 | 1.1745827 | 0.658 | 0.197 | 0 |
| chr3 | 8501630 | 187745727 | 179244098 |
|
0.1294057 | BCL6 | chr3-8501296-8501964 | 2.002691 | 0.0226052 | 0 | 0.2607253 | 0.312 | 0.125 | 0 | GC/DZ | 8501296 | 8501964 | BCL6 | 0 | 0.8223499 | 0.731 | 0.175 | 0 |
| chr3 | 8658427 | 187745727 | 179087301 |
|
0.1187620 | BCL6 | chr3-8657833-8659020 | 1.910297 | 0.0280475 | 0 | 0.2907075 | 0.123 | 0.029 | 0 | GC/DZ | 8657833 | 8659020 | BCL6 | 0 | 0.8223499 | 0.731 | 0.175 | 0 |
| chr3 | 9653316 | 187745727 | 178092412 |
|
0.1859457 | BCL6 | chr3-9652401-9654230 | 3.790392 | 0.0000752 | 0 | 0.3467498 | 0.313 | 0.103 | 0 | GC/DZ | 9652401 | 9654230 | BCL6 | 0 | 0.8223499 | 0.731 | 0.175 | 0 |
| chr3 | 9653316 | 187745727 | 178092412 |
|
0.1859457 | BCL6 | chr3-9652401-9654230 | 3.790392 | 0.0000752 | 0 | 0.2631839 | 0.242 | 0.120 | 0 | GC/LZ | 9652401 | 9654230 | BCL61 | 0 | 1.1745827 | 0.658 | 0.197 | 0 |
| chr3 | 9752268 | 187745727 | 177993460 |
|
0.1983285 | BCL6 | chr3-9751790-9752745 | 4.396954 | 0.0000055 | 0 | 0.3858557 | 0.296 | 0.085 | 0 | GC/DZ | 9751790 | 9752745 | BCL6 | 0 | 0.8223499 | 0.731 | 0.175 | 0 |
DT::datatable(df_link_DARs_DEA,caption = "Table of the filtered links peaks by DARs and GEx", class = 'cell-border stripe')
kbl(head(df_link_DARs_DEA),caption = "Table of the filtered links peaks by DARs and GEx") %>%
kable_paper("striped", full_width = F)
| seqnames | start | end | width | strand | score | gene | peak | zscore | pvalue | p_val.dars | avg_log2FC.dars | pct.1.dars | pct.2.dars | p_val_adj.dars | cluster | start.peak | end.peak | p_val.rna | avg_log2FC.rna | pct.1.rna | pct.2.rna | p_val_adj.rna | p_val_adj.y |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr3 | 1381223 | 187745727 | 186364505 |
|
0.1209302 | BCL6 | chr3-1380485-1381960 | 1.959346 | 0.0250361 | 0 | 0.2983296 | 0.176 | 0.069 | 0 | GC/LZ | 1380485 | 1381960 | BCL61 | 0 | 1.1745827 | 0.658 | 0.197 | 0 |
| chr3 | 8501630 | 187745727 | 179244098 |
|
0.1294057 | BCL6 | chr3-8501296-8501964 | 2.002691 | 0.0226052 | 0 | 0.2607253 | 0.312 | 0.125 | 0 | GC/DZ | 8501296 | 8501964 | BCL6 | 0 | 0.8223499 | 0.731 | 0.175 | 0 |
| chr3 | 8658427 | 187745727 | 179087301 |
|
0.1187620 | BCL6 | chr3-8657833-8659020 | 1.910297 | 0.0280475 | 0 | 0.2907075 | 0.123 | 0.029 | 0 | GC/DZ | 8657833 | 8659020 | BCL6 | 0 | 0.8223499 | 0.731 | 0.175 | 0 |
| chr3 | 9653316 | 187745727 | 178092412 |
|
0.1859457 | BCL6 | chr3-9652401-9654230 | 3.790392 | 0.0000752 | 0 | 0.3467498 | 0.313 | 0.103 | 0 | GC/DZ | 9652401 | 9654230 | BCL6 | 0 | 0.8223499 | 0.731 | 0.175 | 0 |
| chr3 | 9653316 | 187745727 | 178092412 |
|
0.1859457 | BCL6 | chr3-9652401-9654230 | 3.790392 | 0.0000752 | 0 | 0.2631839 | 0.242 | 0.120 | 0 | GC/LZ | 9652401 | 9654230 | BCL61 | 0 | 1.1745827 | 0.658 | 0.197 | 0 |
| chr3 | 9752268 | 187745727 | 177993460 |
|
0.1983285 | BCL6 | chr3-9751790-9752745 | 4.396954 | 0.0000055 | 0 | 0.3858557 | 0.296 | 0.085 | 0 | GC/DZ | 9751790 | 9752745 | BCL6 | 0 | 0.8223499 | 0.731 | 0.175 | 0 |
idents.plot <- c("NBC","MBC", "GC/DZ", "GC/LZ","PC")
coverage_extend("BCL6",c(0,2000,1e+4,1e+5,1e+6),tonsil_wnn_bcell_links)
## [[1]]
## Warning: Removed 1 rows containing missing values (geom_segment).
## Removed 1 rows containing missing values (geom_segment).
##
## [[2]]
##
## [[3]]
##
## [[4]]
##
## [[5]]
## Warning: Removed 22 rows containing missing values (geom_segment).
coverage_extend("BCL6",c(0,2000,1e+4,1e+5,1e+6),tonsil_wnn_bcell_links_DARs_DEA)
## [[1]]
## Warning: Removed 1 rows containing missing values (geom_segment).
## Removed 1 rows containing missing values (geom_segment).
##
## [[2]]
##
## [[3]]
##
## [[4]]
##
## [[5]]
## Warning: Removed 22 rows containing missing values (geom_segment).
coverage_extend("PRDM1",c(0,2000,1e+4,1e+5,1e+6),tonsil_wnn_bcell_links)
## [[1]]
## Warning: Removed 55 rows containing missing values (geom_segment).
## Warning: Removed 1 rows containing missing values (geom_segment).
## Removed 1 rows containing missing values (geom_segment).
##
## [[2]]
## Warning: Removed 55 rows containing missing values (geom_segment).
## Removed 1 rows containing missing values (geom_segment).
##
## [[3]]
## Warning: Removed 54 rows containing missing values (geom_segment).
## Removed 1 rows containing missing values (geom_segment).
##
## [[4]]
## Warning: Removed 40 rows containing missing values (geom_segment).
##
## [[5]]
## Warning: Removed 2 rows containing missing values (geom_segment).
coverage_extend("PRDM1",c(0,2000,1e+4,1e+5,1e+6),tonsil_wnn_bcell_links_DARs_DEA)
## [[1]]
## Warning: Removed 55 rows containing missing values (geom_segment).
## Warning: Removed 1 rows containing missing values (geom_segment).
## Removed 1 rows containing missing values (geom_segment).
##
## [[2]]
## Warning: Removed 55 rows containing missing values (geom_segment).
## Removed 1 rows containing missing values (geom_segment).
##
## [[3]]
## Warning: Removed 54 rows containing missing values (geom_segment).
## Removed 1 rows containing missing values (geom_segment).
##
## [[4]]
## Warning: Removed 40 rows containing missing values (geom_segment).
##
## [[5]]
## Warning: Removed 2 rows containing missing values (geom_segment).
Here we can see the comparison of how many links are in each cluster and how we filter specifics peaks that are DA and belongs to DE genes of each cluster.
Doing so we can know which links are cause by a cluster.
table(df_link_DARs_DEA$gene=="BCL6",df_link_DARs_DEA$cluster)
##
## GC/DZ GC/LZ PC
## FALSE 0 0 80
## TRUE 341 121 0
table(df_link_DARs$gene=="BCL6",df_link_DARs$cluster)
##
## GC/DZ GC/LZ NBC PC
## FALSE 15 1 0 80
## TRUE 341 121 1 9
sessionInfo()
## R version 4.1.2 (2021-11-01)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Big Sur 10.16
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
##
## locale:
## [1] es_ES.UTF-8/es_ES.UTF-8/es_ES.UTF-8/C/es_ES.UTF-8/es_ES.UTF-8
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods
## [8] base
##
## other attached packages:
## [1] BiocManager_1.30.16 biomaRt_2.50.3
## [3] plyr_1.8.6 BSgenome.Hsapiens.UCSC.hg38_1.4.4
## [5] BSgenome_1.62.0 rtracklayer_1.54.0
## [7] Biostrings_2.62.0 XVector_0.34.0
## [9] forcats_0.5.1 purrr_0.3.4
## [11] readr_2.1.2 tidyr_1.2.0
## [13] tibble_3.1.6 tidyverse_1.3.1
## [15] kableExtra_1.3.4 patchwork_1.1.1
## [17] ggplot2_3.3.5 dplyr_1.0.8
## [19] stringr_1.4.0 EnsDb.Hsapiens.v86_2.99.0
## [21] ensembldb_2.18.3 AnnotationFilter_1.18.0
## [23] GenomicFeatures_1.46.5 AnnotationDbi_1.56.2
## [25] Biobase_2.54.0 harmony_0.1.0
## [27] Rcpp_1.0.8.3 future_1.24.0
## [29] GenomicRanges_1.46.1 GenomeInfoDb_1.30.1
## [31] IRanges_2.28.0 S4Vectors_0.32.3
## [33] BiocGenerics_0.40.0 SeuratObject_4.0.4
## [35] Seurat_4.1.0 Signac_1.6.0
## [37] RColorBrewer_1.1-2 BiocStyle_2.22.0
##
## loaded via a namespace (and not attached):
## [1] rappdirs_0.3.3 SnowballC_0.7.0
## [3] scattermore_0.8 bit64_4.0.5
## [5] knitr_1.37 irlba_2.3.5
## [7] DelayedArray_0.20.0 data.table_1.14.2
## [9] rpart_4.1-15 KEGGREST_1.34.0
## [11] RCurl_1.98-1.6 generics_0.1.2
## [13] cowplot_1.1.1 RSQLite_2.2.10
## [15] RANN_2.6.1 bit_4.0.4
## [17] tzdb_0.2.0 spatstat.data_2.1-2
## [19] webshot_0.5.2 xml2_1.3.3
## [21] lubridate_1.8.0 httpuv_1.6.5
## [23] SummarizedExperiment_1.24.0 assertthat_0.2.1
## [25] xfun_0.30 hms_1.1.1
## [27] jquerylib_0.1.4 evaluate_0.15
## [29] promises_1.2.0.1 fansi_1.0.2
## [31] restfulr_0.0.13 progress_1.2.2
## [33] dbplyr_2.1.1 readxl_1.3.1
## [35] igraph_1.2.11 DBI_1.1.2
## [37] htmlwidgets_1.5.4 sparsesvd_0.2
## [39] spatstat.geom_2.3-2 ellipsis_0.3.2
## [41] crosstalk_1.2.0 backports_1.4.1
## [43] bookdown_0.25 deldir_1.0-6
## [45] MatrixGenerics_1.6.0 vctrs_0.3.8
## [47] ROCR_1.0-11 abind_1.4-5
## [49] cachem_1.0.6 withr_2.5.0
## [51] ggforce_0.3.3 vroom_1.5.7
## [53] sctransform_0.3.3 GenomicAlignments_1.30.0
## [55] prettyunits_1.1.1 goftest_1.2-3
## [57] svglite_2.1.0 cluster_2.1.2
## [59] lazyeval_0.2.2 crayon_1.5.0
## [61] pkgconfig_2.0.3 slam_0.1-50
## [63] labeling_0.4.2 tweenr_1.0.2
## [65] nlme_3.1-153 ProtGenerics_1.26.0
## [67] rlang_1.0.2 globals_0.14.0
## [69] lifecycle_1.0.1 miniUI_0.1.1.1
## [71] filelock_1.0.2 BiocFileCache_2.2.1
## [73] modelr_0.1.8 cellranger_1.1.0
## [75] polyclip_1.10-0 matrixStats_0.61.0
## [77] lmtest_0.9-39 Matrix_1.3-4
## [79] ggseqlogo_0.1 zoo_1.8-9
## [81] reprex_2.0.1 ggridges_0.5.3
## [83] png_0.1-7 viridisLite_0.4.0
## [85] rjson_0.2.21 bitops_1.0-7
## [87] KernSmooth_2.23-20 blob_1.2.2
## [89] parallelly_1.30.0 spatstat.random_2.1-0
## [91] scales_1.1.1 memoise_2.0.1
## [93] magrittr_2.0.2 ica_1.0-2
## [95] zlibbioc_1.40.0 compiler_4.1.2
## [97] BiocIO_1.4.0 fitdistrplus_1.1-8
## [99] Rsamtools_2.10.0 cli_3.2.0
## [101] listenv_0.8.0 pbapply_1.5-0
## [103] MASS_7.3-54 mgcv_1.8-38
## [105] tidyselect_1.1.2 stringi_1.7.6
## [107] highr_0.9 yaml_2.3.5
## [109] ggrepel_0.9.1 grid_4.1.2
## [111] sass_0.4.0 fastmatch_1.1-3
## [113] tools_4.1.2 future.apply_1.8.1
## [115] parallel_4.1.2 rstudioapi_0.13
## [117] lsa_0.73.2 gridExtra_2.3
## [119] farver_2.1.0 Rtsne_0.15
## [121] digest_0.6.29 shiny_1.7.1
## [123] qlcMatrix_0.9.7 broom_0.7.12
## [125] later_1.3.0 RcppAnnoy_0.0.19
## [127] httr_1.4.2 colorspace_2.0-3
## [129] rvest_1.0.2 XML_3.99-0.9
## [131] fs_1.5.2 tensor_1.5
## [133] reticulate_1.24 splines_4.1.2
## [135] uwot_0.1.11 RcppRoll_0.3.0
## [137] spatstat.utils_2.3-0 plotly_4.10.0
## [139] systemfonts_1.0.4 xtable_1.8-4
## [141] jsonlite_1.8.0 R6_2.5.1
## [143] pillar_1.7.0 htmltools_0.5.2
## [145] mime_0.12 DT_0.21
## [147] glue_1.6.2 fastmap_1.1.0
## [149] BiocParallel_1.28.3 codetools_0.2-18
## [151] utf8_1.2.2 lattice_0.20-45
## [153] bslib_0.3.1 spatstat.sparse_2.1-0
## [155] curl_4.3.2 leiden_0.3.9
## [157] magick_2.7.3 survival_3.2-13
## [159] rmarkdown_2.13 docopt_0.7.1
## [161] munsell_0.5.0 GenomeInfoDbData_1.2.7
## [163] haven_2.4.3 reshape2_1.4.4
## [165] gtable_0.3.0 spatstat.core_2.4-0